Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1215 172 8e-38 seq748 100 4e-16 >seq1215 Length=434531 Score = 172 bits (190), Expect = 8e-38 Identities = 209/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| |||| ||||| || ||||| |||||||||| || || || | ||| Sbjct 116318 AAGGGACAGTCCTTTACATTATTGCAGATGAGAGACTGAATGGAGGCTGTGTTGATGATC 116377 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | |||||||| || || || |||||||| || |||||||| | || || || || Sbjct 116378 TTAAAACCTACTTCTCCACCAAAGGTGCTCGGCTTCCAGTAGTCAGGAGAACATATAGGA 116437 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| ||||||| ||| Sbjct 116438 TTTCCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCACCAAAG 116497 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | || || || || || || | | | ||| ||| || || | ||| |||| | Sbjct 116498 ATGGCATCTGGGCGAGGCTTCTCTACCAGCAGGGCAGGGTACAGCTCCATAGCATCGATG 116557 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||||| ||||||||||| ||||| || |||||||| ||| Sbjct 116558 TCACCATAGACTGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCT 116602 Score = 138 bits (152), Expect = 2e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || |||||| || || ||||||| || || || |||| || ||||| || || Sbjct 118811 GTCTGGAACAACCTTTCATCGTCCCATTCTGGATGCTCCCGTTTAAGCACATCACACACT 118870 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| |||||||| |||||||| | ||| ||||| | |||||| Sbjct 118871 CTGTTGTGTTCCCGCAGCCAGATGGTGGCATACATCATGAGACCAGGCACCAGACCAAAG 118930 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | ||||| ||||| ||||| | || || || | || | ||| | ||| | Sbjct 118931 ACCTCCTGTCCCACAGCAAACCGCAGGTGTTCAGGGACGTTAGGGGGATAGATCATCTCT 118990 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 ||||| || |||||||| ||||| || || | || || ||||| Sbjct 118991 ACCTGAGTATCTTTGACTGTGGGAGGGTATACCTCTCCATCAAT 119034 Score = 114 bits (126), Expect = 2e-20 Identities = 133/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCAT-ATCGGTCCTAAA 10180 ||||||||||| |||| ||| | |||||||| |||||||| | || ||| ||| | || Sbjct 121191 CTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGTCCTCG-ATGATGATCTGTCTTGAA 121249 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || || ||||| | || || || ||||||| || |||||||||||||| Sbjct 121250 AAACTGATGAGTGAAATGTTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 121309 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 |||||||| | || | | || || ||| ||||||| || | | ||||| || || Sbjct 121310 AGGGATAAACTTTCTTCTTAGAAGAAATTTTTCCACAACCTCTTTCGAATCAGGAAG 121366 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| ||||||||| || || ||||| || ||| || Sbjct 121867 TCACCTTTCACACCCATGGGAGTCGGGCAGTCATCAGCCACAGGAGGAAGGACTCTGGTG 121926 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| ||||| || || ||||||||||| ||||||||||| | | ||||| Sbjct 121927 TAATAGGAGAGATTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTGCACATTGTAAGTT 121986 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||| ||||||| | || |||||| Sbjct 121987 GGTGGACTCTCAATCAAATGTGATCTGGCT 122016 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || ||||||| | |||| ||||| ||||| ||||| |||||| ||| | Sbjct 122859 CTTACGTGTGGAACAGTTTTCACCATAGAACCCAGTCCGGGTACAGTCGCACTTATACTG 122918 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| || ||||| |||| ||||| || || || |||| ||||||||||| || Sbjct 122919 GTCAAATCCTGTGGTCATACATATACCTCGGTTTTGACATGGGTTGGAACAGCAAGGATT 122978 Query 10960 GGCTGCAAT 10968 ||| |||| Sbjct 122979 TGCTACAAT 122987 >seq748 Length=543513 Score = 100 bits (110), Expect = 4e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || || || ||||| || ||||||||| | || || |||||| ||| | | ||| Sbjct 491192 TCGCCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAACAGATGGGATTCCCTAGGAGA 491133 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 || || | |||||| |||||||| | ||| || || ||||| || ||||||| || Sbjct 491132 CCCTTGAGGGAAAATGGAGCCCCAATCTCTATCATACTCTCCCCAAAGATGGAGTTTGGT 491073 Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGG 9142 | ||||| | | | |||| | ||| || | || || | ||| ||||| | Sbjct 491072 AGGCACTTTTCAAGCAGCAGCCCAGGGAAGAACTCCAAGGCATCAATGTCTCCATATAAC 491013 Query 9143 GCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAAG 9180 |||||||||| ||||| ||||||||||| |||| ||| Sbjct 491012 TCTTCCAACTCAGCAGCCATCTCCTTCTCTCCTATAAG 490975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722104008647600