Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq1215 172 8e-38
seq748 100 4e-16
>seq1215
Length=434531
Score = 172 bits (190), Expect = 8e-38
Identities = 209/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950
|| ||||| |||| ||||| || ||||| |||||||||| || || || | |||
Sbjct 116318 AAGGGACAGTCCTTTACATTATTGCAGATGAGAGACTGAATGGAGGCTGTGTTGATGATC 116377
Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010
| |||||||| || || || |||||||| || |||||||| | || || || ||
Sbjct 116378 TTAAAACCTACTTCTCCACCAAAGGTGCTCGGCTTCCAGTAGTCAGGAGAACATATAGGA 116437
Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070
|| |||| || ||||||||||| || || || || || || | ||| ||||||| |||
Sbjct 116438 TTTCCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCACCAAAG 116497
Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130
|||||| | || || || || || || | | | ||| ||| || || | ||| |||| |
Sbjct 116498 ATGGCATCTGGGCGAGGCTTCTCTACCAGCAGGGCAGGGTACAGCTCCATAGCATCGATG 116557
Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| ||||||| ||||||||||| ||||| || |||||||| |||
Sbjct 116558 TCACCATAGACTGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCT 116602
Score = 138 bits (152), Expect = 2e-27
Identities = 165/224 (74%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| || |||||| || || ||||||| || || || |||| || ||||| || ||
Sbjct 118811 GTCTGGAACAACCTTTCATCGTCCCATTCTGGATGCTCCCGTTTAAGCACATCACACACT 118870
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
||||||||||| | |||||| |||||||| |||||||| | ||| ||||| | ||||||
Sbjct 118871 CTGTTGTGTTCCCGCAGCCAGATGGTGGCATACATCATGAGACCAGGCACCAGACCAAAG 118930
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
|| || | ||||| ||||| ||||| | || || || | || | ||| | ||| |
Sbjct 118931 ACCTCCTGTCCCACAGCAAACCGCAGGTGTTCAGGGACGTTAGGGGGATAGATCATCTCT 118990
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962
||||| || |||||||| ||||| || || | || || |||||
Sbjct 118991 ACCTGAGTATCTTTGACTGTGGGAGGGTATACCTCTCCATCAAT 119034
Score = 114 bits (126), Expect = 2e-20
Identities = 133/177 (75%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCAT-ATCGGTCCTAAA 10180
||||||||||| |||| ||| | |||||||| |||||||| | || ||| ||| | ||
Sbjct 121191 CTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGTCCTCG-ATGATGATCTGTCTTGAA 121249
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
||| || || || || ||||| | || || || ||||||| || ||||||||||||||
Sbjct 121250 AAACTGATGAGTGAAATGTTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 121309
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
|||||||| | || | | || || ||| ||||||| || | | ||||| || ||
Sbjct 121310 AGGGATAAACTTTCTTCTTAGAAGAAATTTTTCCACAACCTCTTTCGAATCAGGAAG 121366
Score = 104 bits (114), Expect = 3e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | ||||| ||||||||| || || ||||| || ||| ||
Sbjct 121867 TCACCTTTCACACCCATGGGAGTCGGGCAGTCATCAGCCACAGGAGGAAGGACTCTGGTG 121926
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| ||||| || || ||||||||||| ||||||||||| | | |||||
Sbjct 121927 TAATAGGAGAGATTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTGCACATTGTAAGTT 121986
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| ||||| ||||||| | || ||||||
Sbjct 121987 GGTGGACTCTCAATCAAATGTGATCTGGCT 122016
Score = 84.2 bits (92), Expect = 3e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899
|||||| || ||||||| | |||| ||||| ||||| ||||| |||||| ||| |
Sbjct 122859 CTTACGTGTGGAACAGTTTTCACCATAGAACCCAGTCCGGGTACAGTCGCACTTATACTG 122918
Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959
||||| || ||||| |||| ||||| || || || |||| ||||||||||| ||
Sbjct 122919 GTCAAATCCTGTGGTCATACATATACCTCGGTTTTGACATGGGTTGGAACAGCAAGGATT 122978
Query 10960 GGCTGCAAT 10968
||| ||||
Sbjct 122979 TGCTACAAT 122987
>seq748
Length=543513
Score = 100 bits (110), Expect = 4e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022
|| || || || ||||| || ||||||||| | || || |||||| ||| | | |||
Sbjct 491192 TCGCCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAACAGATGGGATTCCCTAGGAGA 491133
Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082
|| || | |||||| |||||||| | ||| || || ||||| || ||||||| ||
Sbjct 491132 CCCTTGAGGGAAAATGGAGCCCCAATCTCTATCATACTCTCCCCAAAGATGGAGTTTGGT 491073
Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGG 9142
| ||||| | | | |||| | ||| || | || || | ||| ||||| |
Sbjct 491072 AGGCACTTTTCAAGCAGCAGCCCAGGGAAGAACTCCAAGGCATCAATGTCTCCATATAAC 491013
Query 9143 GCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAAG 9180
|||||||||| ||||| ||||||||||| |||| |||
Sbjct 491012 TCTTCCAACTCAGCAGCCATCTCCTTCTCTCCTATAAG 490975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 722104008647600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |