Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1029 134 1e-26 seq633 123 2e-23 seq1701 98.7 1e-15 seq9005 95.1 1e-14 seq3013 93.3 4e-14 >seq1029 Length=469353 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| |||||| ||| Sbjct 371837 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 371778 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 371777 GACACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCTGACCA 371719 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||||||||| || | |||||||| |||||||| Sbjct 371718 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 371659 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || || || | || ||||| ||||| ||||| ||||| || || Sbjct 371658 CATTCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGTGG 371611 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| |||||| ||| Sbjct 372065 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 372006 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 372005 GACACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCTGACCA 371947 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || ||||||||||| || | |||||||| |||||||| Sbjct 371946 GCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 371887 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || |||| ||||||| ||| | ||||| || Sbjct 371886 CATCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGAGGTGG 371839 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| |||||| ||| Sbjct 372293 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 372234 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 372233 GACACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 372175 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || ||||||||||| || | |||||||| |||||||| Sbjct 372174 GCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 372115 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || |||| ||||||| ||| | ||||| || Sbjct 372114 CATCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGAGGTGG 372067 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| |||||| ||| Sbjct 372521 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 372462 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 372461 GACACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 372403 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || ||||||||||| || | |||||||| |||||||| Sbjct 372402 GCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 372343 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || |||| ||||||| ||| | ||||| || Sbjct 372342 CATCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGAGGTGG 372295 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| |||||| ||| Sbjct 372749 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 372690 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 372689 GACACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 372631 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || ||||||||||| || | |||||||| |||||||| Sbjct 372630 GCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 372571 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || |||| ||||||| ||| | ||||| || Sbjct 372570 CATCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGAGGTGG 372523 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || ||||| ||||||||| |||| |||||| ||| Sbjct 372978 AATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 372919 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | |||| Sbjct 372918 TGACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACC 372860 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| || | || | ||| || ||||||||||| || | |||||||| ||||||| Sbjct 372859 AGCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACA 372800 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| || || | || |||| ||||||| ||| | ||||| || Sbjct 372799 ACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGAGGTGG 372751 >seq633 Length=582679 Score = 123 bits (136), Expect = 2e-23 Identities = 175/247 (71%), Gaps = 7/247 (3%) Strand=Plus/Minus Query 38231 ACTCTTTaaaa-------aaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCA 38283 ||||||||||| |||||||||| ||||| || || || || ||||| ||||||| Sbjct 204566 ACTCTTTAAAATAGGTCAAAATGCAAATTTTCGTGAAGACTCTGACCGGCAAGACCATCA 204507 Query 38284 CCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAG 38343 || | || || ||| ||| |||| | | | | | || | || |||| || |||| Sbjct 204506 CCCTGGAAGTGGAGCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAG 204447 Query 38344 AGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGC 38403 | || || ||| | ||||| ||| ||||||| | || ||||| |||||||| || | | Sbjct 204446 AAGGCATCCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCC 204387 Query 38404 GCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGA 38463 |||| || || ||||||||||| || || | || |||| ||||||| ||| | | Sbjct 204386 GCACTCTTTCTGATTACAACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCA 204327 Query 38464 GAGGCGG 38470 |||| || Sbjct 204326 GAGGTGG 204320 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 204318 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 204259 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || ||||| || || ||| | ||||| Sbjct 204258 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCAG 204199 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| |||||||| || | ||||| || ||||||||| Sbjct 204198 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 204139 Query 38424 ATCCAAAAGGA 38434 ||||| || || Sbjct 204138 ATCCAGAAAGA 204128 >seq1701 Length=366390 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||| | || ||||| || || | |||||| ||||| || |||| ||| || ||| Sbjct 285410 ATGCAA-TCTTTGTAAAGACCCTGATGGGCAAGACCATTTCCCTCGAGGTCAAGCCCAGT 285468 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||||| | | | | | | ||||||| ||||| ||||| ||||| | ||| | Sbjct 285469 GACAGCATCGAGAATGTCA--GTCAAAATCCAAGACAAGGAGGGCATTCCACCTGACTAG 285526 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 | || || || | ||||||||||||||||| || | ||| || ||||||||| Sbjct 285527 CCACGTCTGATGTTTGCGGGCAAACAGCTGGAGGATGGCTACACTCTTTCAGACTACAAC 285586 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 | ||| ||||| | || ||||| ||||||||| Sbjct 285587 AGCCAGAAGGAGTCCACCCTGCACTTGGTGCTG 285619 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 38270 GGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAA 38329 |||||| ||||| || |||| ||| || ||| |||||| | | | | | | || Sbjct 286129 GGGCAAGACCATTTCCCTCGAGGTCAAGCCCAGTGACAGCATCGAGAATGTCA--GTCAA 286186 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 ||||| ||||| ||||| ||||| | ||| | | || || || | ||||||||||| Sbjct 286187 AATCCAAGACAAGGAGGGCATTCCACCTGACTAGCCACGTCTGATGTTTGCGGGCAAACA 286246 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTT 38449 |||||| || | ||| || |||||||||| ||| ||||| | || ||||| || Sbjct 286247 GCTGGAGGATGGCTACACTCTTTCAGACTACAACAGCCAGAAGGAGTCCACCCTGCACTT 286306 Query 38450 GGTGCTG 38456 ||||||| Sbjct 286307 GGTGCTG 286313 >seq9005 Length=82358 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || | || | |||||||| ||||||||| | || |||||| ||| Sbjct 12548 ATGCAGATCTTTGTGGAGACCTTGACGGGCAAGACCATCACCTT-GAGGTCGAGCCCAGT 12490 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||| ||| ||||| ||||| || || || ||||| Sbjct 12489 GACACCATCAAGAATGTCAACGCCAAAGTCCAAGACAAGGAGGGCATCCCAGCTGACCAG 12430 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 |||| || || | ||||||||||||||||| || | | ||| || ||||||||| Sbjct 12429 CAGCATCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCACACTCTTTCAGACTACAAC 12370 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGC 38457 |||| | || | || ||| |||||||||| Sbjct 12369 GTCCAGGAAGAGTCCACCCTGTCCTTGGTGCTGC 12336 >seq3013 Length=259453 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAA 133455 ||||||||| | |||||||| || ||||| ||||| || ||||| ||| ||||| Sbjct 188194 ACCTCCTCGGCTGTCCAAAAGGAAGCCTCCGCTTTCTTATACATTTGCCAAATGTCGTGG 188253 Query 133456 TATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || | |||||||| | ||||| |||||||||||||| | || |||||||||| Sbjct 188254 TACTCGATGGGAAAGACGACAAAGCGGCGGGGGTTTTCTCTCAGCAGCGGCTCC 188307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499050449749760