Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1131 167 9e-36 seq6212 132 2e-25 seq5167 118 4e-21 seq50868 114 5e-20 seq19457 114 5e-20 seq4376 100 1e-15 seq1192 95.1 5e-14 seq550 91.5 6e-13 >seq1131 Length=450426 Score = 167 bits (184), Expect = 9e-36 Identities = 465/702 (66%), Gaps = 21/702 (3%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || || || || || || || ||||||| |||||||| || || | ||| | || || Sbjct 216136 GCCATAGGCATCGACCTGGGCACCACCTACTCATGTGTGGGGGTGTTCCAGCACGGCAAG 216195 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----TT 451029 || || || ||||| || ||||| || || || || || || | || || || Sbjct 216196 GTGGAGATCATAGCCAACGACCAGGGCAACCGCACCACCCC--CA--GCTACGTGGCCTT 216251 Query 451030 TACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCA 451088 || || | || | || | ||| | || || || | | | |||| ||| || Sbjct 216252 CACAGACACTGAGCGGCTCATTGGGGATGCAGCCAAGAACCA-GGTAGCCATGAATCCCC 216310 Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 | ||||| || | |||||| |||||| | |||||| | | | | ||||| | || | Sbjct 216311 AGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTAGTGC 216370 Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTA--TAT 451206 || ||| | ||| | | ||| | | || | | | || ||| |||||| | ||| Sbjct 216371 AAGCAGATATGAAACTTTGGCCTTTTCAAGTGATCAGTGAAGGAGGCAAGCCCAAAGTAT 216430 Query 451207 TCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGT 451266 || || || ||||| || | |||| |||| ||||| ||||| || || ||||| Sbjct 216431 TCGTGTCG--TACAAAGGAGAGAATAAAGCTTTCTACCCTGAGGAAATCTCTTCGATGGT 216488 Query 451267 TCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTC-CAGTTACTGATGCAG 451325 || ||||| ||||| || || || ||| | | |||| | | | || || |||| | Sbjct 216489 ACTGACTAAGATGAAGGAGACTGCTGAAGCTTTT-TTGGGCCACACTGTCACCAATGCTG 216547 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 | |||||||| || |||||||||||||| | ||||| || || || || |||||||| Sbjct 216548 TGATTACTGTGCCAGCTTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGTG 216607 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 ||||| || | ||||| || |||| || |||||||| ||||| ||||| | || | Sbjct 216608 TGATTGCAGGACTCAATGTGCTAAGAATAATCAATGAACCCACAGCTGCTGCCATTGCCT 216667 Query 451446 ATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 |||| ||| || || || | ||| | || || | | |||||| | ||| Sbjct 216668 ATGGTTTAG----ATAAAGGTGGCCAGGGAGAGCGACATGTTCTGATCTTTGATCTGGGT 216723 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCA 451564 ||||| || |||| |||| | || | || || |||||| | ||||| ||||||||| Sbjct 216724 GGAGGCACATTTGATGTTTCTATCCTGACCATAGATGATGGGATTTTTGAGGTAAAGGCA 216783 Query 451565 ACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 || || || || || || || || || ||| |||| ||| Sbjct 216784 ACGGCCGGGGACACGCACCTGGGCGGGGAGGATTTTGACAAT 216825 >seq6212 Length=135874 Score = 132 bits (146), Expect = 2e-25 Identities = 228/330 (69%), Gaps = 11/330 (3%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTC-CAGTTACTGATGCAGTAATTAC 451332 || |||||||| || ||| || | || |||| | | ||| | |||| || || || Sbjct 87206 AAGATGAAAGAGACTGCATAAAATTAC-TTGGGACACACAGGAAAAAATGCTGTGATCAC 87148 Query 451333 TGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGC 451392 || || |||||||||| ||| |||| | || || ||||| ||| | || || || | Sbjct 87147 AGTCCCAGCTTATTTCAGTGACTCACAGAGACAGGCCACTAAGGATCCCGGCCAGATATC 87088 Query 451393 TGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 ||| ||||||| |||| | ||||||||||| ||||| ||| |||| || ||||| || Sbjct 87087 TGGACTAAATGTGCTTCAGGTGATTAATGAACCCACAGCTGCTCCTCTGGCCTATGGTCT 87028 Query 451453 AGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAAC 451512 || |||| ||||||| |||| ||| || | |||||| ||||| ||||| Sbjct 87027 AGACAAAT---------CAGAAGATAAAATCATTGCTGTGTATGATTTAGGTGGTGGAAC 86977 Query 451513 TCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGG 451572 | ||||| |||| | | |||| | | || |||||||| || || | |||||| Sbjct 86976 TTTTGATATTTCTATCTTGGAAATTCATAAAGGAGTATTTGAGGTGAAATCTCCCAATGA 86917 Query 451573 TGATACTCATCTAGGAGGTGAAGATATTGA 451602 || ||| |||| |||||||| |||| Sbjct 86916 GGACACTTTCTTAGGTGGTGAAGACTTTGA 86887 >seq5167 Length=254018 Score = 118 bits (130), Expect = 4e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| | | || || || || |||||||| |||||| | | Sbjct 220714 ATGCAGATTTTCGTAAAAACCTTTATGGGGAAGACCATCACTCTTGAGGTTGAACCCTTG 220655 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || |||||||||||||||||||||||||| Sbjct 220654 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 220595 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || | | || || ||||| ||||||||| | |||||| | || ||||| Sbjct 220594 CAAAGACTGATCTCTGCTGGTAAGCAACTGGAAGATGGACGTACTTTGTCTGACTATAAC 220535 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| ||| ||||| | || || ||||| Sbjct 220534 ATTCAGAAGGAGTCAAATCTTCATCTTGTGTTTAGACT 220497 >seq50868 Length=3469 Score = 114 bits (126), Expect = 5e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | ||||| || | || | ||||| |||||||| |||| | || Sbjct 1896 ATGCAGATTTTCATAAAAACCCTTATGGGGAGGACTATCACTCTTGAGTCTGAACCCTCA 1955 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || |||||||||||||||||||||||||| Sbjct 1956 GATACAATAGAAAATGTAAAGGCTAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 2015 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || || || ||||||||| | |||||| | || ||||| Sbjct 2016 CAAAGACTGATCTTTGCTGGTAAGCACCTCGAAGATGGATGTACTTTGTCTGACTATAAC 2075 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| |||| ||||| Sbjct 2076 ATTCAGAAGGAGTCAACTCTTCA 2098 >seq19457 Length=14611 Score = 114 bits (126), Expect = 5e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | ||||| || | || | ||||| |||||||| |||| | || Sbjct 2151 ATGCAGATTTTCATAAAAACCCTTATGGGGAGGACTATCACTCTTGAGTCTGAACCCTCA 2092 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || |||||||||||||||||||||||||| Sbjct 2091 GATACAATAGAAAATGTAAAGGCTAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 2032 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || || || ||||||||| | |||||| | || ||||| Sbjct 2031 CAAAGACTGATCTTTGCTGGTAAGCACCTCGAAGATGGATGTACTTTGTCTGACTATAAC 1972 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| |||| ||||| Sbjct 1971 ATTCAGAAGGAGTCAACTCTTCA 1949 >seq4376 Length=192284 Score = 100 bits (110), Expect = 1e-15 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | ||||| || || || || || || | |||||| ||||| | || Sbjct 63661 ATGCAGATTTTCATAAAAACCCTTACGGGAAAGACCATCATTCTTGACATTGAACCCTCG 63602 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || | | | | || || || || |||||||||||||||||||||||||| Sbjct 63601 GATACAATAGGAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 63542 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | | || | || || ||||| ||||||||| | ||||| |||||||| Sbjct 63541 CAAAGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTT----GATTATAAC 63486 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||| | | || |||| | || || ||||| Sbjct 63485 ATTCAGAAGAAGTCGACTCTTCCTCTTGTGTTGAGACT 63448 >seq1192 Length=438698 Score = 95.1 bits (104), Expect = 5e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | | || || | || || || || |||||||| |||||| | || Sbjct 85984 ATGCAGATTTTCCTAAGAAACCTTATGGGGAAGACCATCACTCTTGAGGTTGAACCCTCA 85925 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| | ||| | || || | || |||||||||||||||||||||||||| Sbjct 85924 GATACAACAGAAAACGTAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGATCAG 85865 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | |||||| || |||| Sbjct 85864 CAAAGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGTACTTTGTTTCATCATAAC 85805 Query 391230 ATTGATAAGGATGCAACACTTC 391251 ||| | ||||| |||| |||| Sbjct 85804 ATTCAGAAGGAGTCAACTCTTC 85783 >seq550 Length=719439 Score = 91.5 bits (100), Expect = 6e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || || |||||||||||||| || || |||||||| Sbjct 498884 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAGCGACAAGCAACC 498943 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| | ||||| | | || || ||||| || Sbjct 498944 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 498996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1971174201991512