Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2256 244 1e-59 seq260 217 2e-51 seq37793 123 3e-23 seq3013 123 3e-23 seq7635 111 2e-19 seq1401 107 2e-18 seq120339 89.7 6e-13 seq18778 84.2 2e-11 >seq2256 Length=312150 Score = 244 bits (270), Expect = 1e-59 Identities = 1195/1888 (63%), Gaps = 52/1888 (3%) Strand=Plus/Plus Query 46968 TTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATAC 47027 || || |||| | ||| |||| || ||||| |||| ||| || | ||||||| || Sbjct 307542 TTCTCCTTTTTTAGAGTGAACTGGATCAGATTAGCTGCTGGTTT-GTGCTTAAATAACAC 307600 Query 47028 ATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAA 47087 || |||||||| ||||| |||| |||||||||||||||||||| | ||| || Sbjct 307601 ATTCCAGTCTTCAAACCCTGCTTCCAGCCATAGAAATGCATACTAGTGAGTTTGCCATTG 307660 Query 47088 CTAGGTTCTGAAATATGAATATTAAGAGATTGACTCT-GATCAATAAATGCACCTCTATC 47146 |||| || | |||||| || || | ||| || || | ||||||| ||||||||||| | Sbjct 307661 TTAGGCTCAGCAATATGGATGTTCAAAGACTGGCTTTTGATCAATGAATGCACCTCTCTT 307720 Query 47147 AGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTT 47206 |||||||| | | || | | || | || ||||| || |||| |||| ||| || Sbjct 307721 CGCTGCCATCTTGAGAACAGTTTTCTGAGAGATTTCCCACACAATTTTTTAAAGTTGCTT 307780 Query 47207 AATGTCTTCTGGGAGAT-TAGTAT--TTTGAATAGATCCTCCgttttctataattttgtt 47263 | ||| || || | | | |||| | || |||| || | | | ||||| | ||| Sbjct 307781 CAGGTCATCAGGAATTTCTGGTATGCTCTGGGTAGAGCCATGGCATACAATAATCTGGTT 307840 Query 47264 ttttaattc---atttgaccaaagttttcgttcagtta-atgtttttaaAAGATGAGGAT 47319 ||| | ||| ||| || ||| | | ||||| | || ||| | ||| | ||| Sbjct 307841 TTTCATTTCCTCATTATAC--AAGCCCT-GCTCAGTAAGATCTTTCAATAAGTTT-GGAC 307896 Query 47320 TAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTT 47379 | ||| | ||||| | | |||| ||||| | |||| || || || ||||| |||| Sbjct 307897 TTACAGTCCTAAATTTTACTGATAAGACTCTGTGAGTATAAATGTTGCTGGTATAAGGTT 307956 Query 47380 CTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTA 47439 || |||||||| || | || || |||||| || |||||||||| |||| | Sbjct 307957 TAATGGATTCATTCTTC---AGGATCCAAG-AGTTGAAGCAGTAGGCATGGGAGCAATAA 308012 Query 47440 ATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAA 47499 | | || |||||||| ||||| ||| |||| |||| || ||||| Sbjct 308013 GTGAACTTTTTCTTACACCATACTTTGCAATCTTCTCTTTGAGAAGTTTTCAGTCCCATG 308072 Query 47500 GATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAAC 47559 | || ||| ||||||||| | | | ||||| |||| ||||| | Sbjct 308073 GGTCCATGGGAGTAACATTCCACACACC-------------CCTTTGCTTACTGGAGAGC 308119 Query 47560 CATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCAC 47619 | | | | |||| ||| || || | || || || ||||| || ||||||| | | Sbjct 308120 CCTCACAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAGGGTTC 308179 Query 47620 TATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTC--AAA 47677 ||||| || ||| || |||| | || || | || || | || || | | Sbjct 308180 CATAATCAATAACTTCGAAGATTTACTTATTCAGTAACTGGGC--CTTAGGACTCTCAGA 308237 Query 47678 AGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCT 47737 | |||| || | |||||| | |||| || ||| | ||| || Sbjct 308238 ATGATATCTCGTCAGGATAAAAGCATCTGCTAGAACTTGTACCCCAGCTCGAATGGGATG 308297 Query 47738 ATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTT 47797 || |||| | || || || ||||| | || || | ||||||||| |||||||| Sbjct 308298 ATAGCATTTACTTGATAAGCATGCCTCTGGAACAGGGTAGTGGTTTATATCAATAATTTT 308357 Query 47798 ATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCA-AACT-TG 47855 | | | | ||| ||||| ||||| ||| || | || Sbjct 308358 ACTCAAGTTTCAAACAATGACTTTAGTGACTTCAGCCAATTTCTTAAAGTCATAAGTGTG 308417 Query 47856 TTATT-TATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATT 47914 || | | ||||| | |||| | || | | || | ||||| | || |||| || Sbjct 308418 TTCTGATGTAACATTCATATTCAAAGCCAAGAAAGCAAAGTTACAAGCCGCAACCTAATC 308477 Query 47915 TGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATT 47974 | | ||||| | || |||||| | || ||||| | ||||||| | |||| || Sbjct 308478 TTTGCTGGTATACTCTACTATTTCTGTGCACAGATTGCTGTATTTGATCCTTCCCAGGTT 308537 Query 47975 TTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTC 48034 || || || | ||||| | || ||| | || || | || || | || || Sbjct 308538 CTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGCAGAGTATGTACGGGGTACGTGTCTC 308597 Query 48035 TATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTT 48094 | ||||||| |||||||| | ||||| | ||| |||| |||||| | Sbjct 308598 TGTCTGAGACTCAATGATGGCAGACCAAAGC-TGCTAATCTTTG--ACAGCTGTGCGGAC 308654 Query 48095 ATTATCATGTTCGTATTTAGT---ATATAACTTCTCAAATTCATCCCCATACACATTATC 48151 | | | |||| | | | | ||||| |||| || |||| || || | || | ||| Sbjct 308655 ACAACCCTGTTTCTCATAACTCTCATATAGCTTCACAGATTCCTCTCCCCAAACTTCATC 308714 Query 48152 TAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGT 48211 | |||||||||||||| || || || || ||||| |||| || | ||| |||| | Sbjct 308715 CAGACCAGGACATTCATTTGGGCATATAAAAGACCAGTCCTGATTAGTTTCCACTCATTT 308774 Query 48212 CATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAG-TTCTTAGTTCTTCAT 48270 || ||| | |||||| |||||||| | | || | |||| | | | || || ||| | Sbjct 308775 CACAAACAGATCTGGAATCCAAAGGACAAAGAAAAGATCCTTGGCATGCTACTT-TTCCT 308833 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 | || | ||| | || | | ||| || || | || || |||||| || || | | Sbjct 308834 TTCCTGTGTTCTTCTTTAAATAAAGGAACTCAAAGATGTCTAAATGCCAAGGCTCCAGGT 308893 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | || || | | | || || | || || || ||| |||| | ||||| || || ||| Sbjct 308894 AAATAGCAAATGCCCCAGGATGCTTGTTTCCACCTGGATCCACATATCAAGCTGTGTTGC 308953 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 ||| ||| | | | | | |||| ||||| || ||||||| || || | | | || | Sbjct 308954 TATTTACTTTGAGCCTCAGTACAAAGCCATTGGAATTACCATTAGTCCCAGCAGTGTAGC 309013 Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 | ||| |||| ||| ||| | | || | | || | || || ||||| || | Sbjct 309014 TGCCAGTAGCCTGAATACAACTCACAGCAACATCAATTCGTCCAGCAGACTTAGAAATCA 309073 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 ||||| | || || || |||||||| ||||| || || |||||| ||||||| | | Sbjct 309074 ATGCACAGTGCTTTAGAGTGTCATAAATGCCTTCAATGCTGTCATCTTTCATATTCAGAA 309133 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAA-ATAATGTTGGAGATGCA 48629 | |||| || || | ||| || || | | ||||| | || | ||||| ||| Sbjct 309134 GGAAACGGCTGGAAAGTTGTGGGCAGTTGGTACTAGCATTAAGAGAACG--GGAGAGGCA 309191 Query 48630 TGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCA 48688 ||| ||||||| ||||| || | | |||||||||| || ||| ||| || || | Sbjct 309192 TGAGTAAACCACTTCTCAGAAAGAAGGCTATATGTTTCGATTGCAGCATCGATGTCTTCT 309251 Query 48689 TTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA-ACAATTTTGT 48747 |||| | || || | ||| || | ||| ||||||| || ||| ||||| ||| |||| Sbjct 309252 TTGA-GAATCCCCACAGACACCCTCATCAACATATGCTGTGGTATTTCAGACACTTTT-C 309309 Query 48748 TATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAA 48807 ||| |||||||| | ||| || || | | ||||| | ||| || || || || | Sbjct 309310 CATTGATTTTCAACAAATAGGACCACTCTAGCATCTTAAAGCTAAAGTAATTATAGGAGA 309369 Query 48808 AGTCGTTATCATTAATAATTGATGAATT 48835 | | | |||| ||||| | ||||| Sbjct 309370 AAACTTAGTCATAGATAATGGCAGAATT 309397 >seq260 Length=805401 Score = 217 bits (240), Expect = 2e-51 Identities = 422/615 (69%), Gaps = 15/615 (2%) Strand=Plus/Plus Query 18936 GTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACT 18995 || ||||| ||||| ||| | | || ||| | ||||| || | ||||| ||||| | Sbjct 242845 GTGTAGAAAGTGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGCCCTCATCTCTGCA 242904 Query 18996 TATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 || | |||||| ||||| || | ||||||| |||||||| ||| || | ||||||||| Sbjct 242905 TA--AGTTCATTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCTTGAGCCAGAATAT 242962 Query 19056 AGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTC 19115 || ||| | || ||||||||||| || |||| ||||| ||| | | || | | ||| Sbjct 242963 TGATGCAGAAGAACCAGAAAAGAAGATTGCTTCCACTGCAGCAGAGGTTACAATACATTC 243022 Query 19116 TCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTAC 19175 | |||| |||| || || | |||||| | || | |||||| || ||| || | Sbjct 243023 TACATAGGTAGCCTCTTTGTCCCCAATCCAGTGCAAGGACCAATCTGCTGCCTTCTTGAA 243082 Query 19176 ACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATA 19235 ||| | ||| | || || | ||| || ||| | | | | | || | |||| | Sbjct 243083 ACAAGCCATCATTTCAATGGCATTGAAGAGA-AATTCCCTTTCTTTGGAATTTTA----A 243137 Query 19236 TGCATCTATCAATA----AACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAA 19291 || | |||||||| |||| || ||||| ||||| | ||||| || || || || | Sbjct 243138 TGTAAATATCAATAAGGCAACTATAGATTTCAGAATGTGTGTTTTCCATGGCAATTTGGA 243197 Query 19292 ATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACT-ACAAAATCTTTCGACCAAA 19350 | || || ||||| | |||||||| ||||| |||| || | ||||| | |||||| Sbjct 243198 AGCCATAGAAACAGCAGGCTTCTGTAATCTG-ACTTTTCTGGCTAAATCGCTTCACCAAA 243256 Query 19351 TTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGT 19410 |||| ||| ||||| |||||||| ||||||| || || | |||| |||||| | Sbjct 243257 TTTTTATTTACTATGCCATCACTCACTGCAAAGAAAGCCAGAACATAGGATGTAAAATAT 243316 Query 19411 TTTTCATCTGAGGTTAATGTATT-CCAATCATTAATATCTTTAGATAAATCTACTTCTTC 19469 | || || | | || | | || ||| | | | | || || | | ||| || | || Sbjct 243317 CTCTCCTCAG-GTTTCAAGCCTTCCCAGTGCTGAGTGTCCTTGTAAAGATCCACCACCTC 243375 Query 19470 AACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTAT 19529 ||| |||||| ||||| || ||||| |||||||| | ||| |||||| || | || Sbjct 243376 GGCTGACCAAAAGGAAGCTTCGGCTTTCTTATACATTTGCCAAATATCATAGAATGGAAT 243435 Query 19530 AGGAAATATAACAAA 19544 |||||| || ||||| Sbjct 243436 AGGAAAGATGACAAA 243450 >seq37793 Length=6272 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| | Sbjct 4349 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 4408 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 4409 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 4468 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 4469 CTACAACACGTTCTCC 4484 >seq3013 Length=259453 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| | Sbjct 181822 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 181881 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 181882 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 181941 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 181942 CTACAACACGTTCTCC 181957 >seq7635 Length=151111 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| |||| ||||| || |||| || || || ||||| ||||| || || Sbjct 95080 TGAAATTCTCCTGATAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 95139 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 95140 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 95199 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 95200 TTTCTTACACCATA 95213 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||||||||| | ||| || | ||||| | ||||| || | Sbjct 92288 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGTTCAGCAATATAGATGT 92347 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || |||||||| ||||||||||| | | || | Sbjct 92348 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 92407 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || |||||||||| ||| || | ||| || || Sbjct 92408 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGG 92456 >seq1401 Length=405806 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | || ||||| |||||||| || ||| Sbjct 92092 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGTCCTCTCTTCTTT 92151 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || ||||| || || ||||| || Sbjct 92152 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGGCC 92211 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 92212 ACAATCCTTTCCCC 92225 >seq120339 Length=683 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||||||||||||| || ||||||||||| ||||||||||| ||||| || || ||| Sbjct 553 ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGATA 612 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTAC 19463 |||| || |||||||| || | | ||||| | | | ||| || |||||||| || Sbjct 613 AAATACTTCTCATCTGACGTAAGCCTGTTCCAGTGAGGGAGATCCTTTGATAAATCAAC 671 >seq18778 Length=15734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| ||||| || ||||| || || |||| Sbjct 7876 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 7817 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||||||||||| Sbjct 7816 ATAAAATCAAATGGATTTT 7798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560847470010960