Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq2256 244 1e-59
seq260 217 2e-51
seq37793 123 3e-23
seq3013 123 3e-23
seq7635 111 2e-19
seq1401 107 2e-18
seq120339 89.7 6e-13
seq18778 84.2 2e-11
>seq2256
Length=312150
Score = 244 bits (270), Expect = 1e-59
Identities = 1195/1888 (63%), Gaps = 52/1888 (3%)
Strand=Plus/Plus
Query 46968 TTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATAC 47027
|| || |||| | ||| |||| || ||||| |||| ||| || | ||||||| ||
Sbjct 307542 TTCTCCTTTTTTAGAGTGAACTGGATCAGATTAGCTGCTGGTTT-GTGCTTAAATAACAC 307600
Query 47028 ATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAA 47087
|| |||||||| ||||| |||| |||||||||||||||||||| | ||| ||
Sbjct 307601 ATTCCAGTCTTCAAACCCTGCTTCCAGCCATAGAAATGCATACTAGTGAGTTTGCCATTG 307660
Query 47088 CTAGGTTCTGAAATATGAATATTAAGAGATTGACTCT-GATCAATAAATGCACCTCTATC 47146
|||| || | |||||| || || | ||| || || | ||||||| ||||||||||| |
Sbjct 307661 TTAGGCTCAGCAATATGGATGTTCAAAGACTGGCTTTTGATCAATGAATGCACCTCTCTT 307720
Query 47147 AGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTT 47206
|||||||| | | || | | || | || ||||| || |||| |||| ||| ||
Sbjct 307721 CGCTGCCATCTTGAGAACAGTTTTCTGAGAGATTTCCCACACAATTTTTTAAAGTTGCTT 307780
Query 47207 AATGTCTTCTGGGAGAT-TAGTAT--TTTGAATAGATCCTCCgttttctataattttgtt 47263
| ||| || || | | | |||| | || |||| || | | | ||||| | |||
Sbjct 307781 CAGGTCATCAGGAATTTCTGGTATGCTCTGGGTAGAGCCATGGCATACAATAATCTGGTT 307840
Query 47264 ttttaattc---atttgaccaaagttttcgttcagtta-atgtttttaaAAGATGAGGAT 47319
||| | ||| ||| || ||| | | ||||| | || ||| | ||| | |||
Sbjct 307841 TTTCATTTCCTCATTATAC--AAGCCCT-GCTCAGTAAGATCTTTCAATAAGTTT-GGAC 307896
Query 47320 TAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTT 47379
| ||| | ||||| | | |||| ||||| | |||| || || || ||||| ||||
Sbjct 307897 TTACAGTCCTAAATTTTACTGATAAGACTCTGTGAGTATAAATGTTGCTGGTATAAGGTT 307956
Query 47380 CTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTA 47439
|| |||||||| || | || || |||||| || |||||||||| |||| |
Sbjct 307957 TAATGGATTCATTCTTC---AGGATCCAAG-AGTTGAAGCAGTAGGCATGGGAGCAATAA 308012
Query 47440 ATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAA 47499
| | || |||||||| ||||| ||| |||| |||| || |||||
Sbjct 308013 GTGAACTTTTTCTTACACCATACTTTGCAATCTTCTCTTTGAGAAGTTTTCAGTCCCATG 308072
Query 47500 GATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAAC 47559
| || ||| ||||||||| | | | ||||| |||| ||||| |
Sbjct 308073 GGTCCATGGGAGTAACATTCCACACACC-------------CCTTTGCTTACTGGAGAGC 308119
Query 47560 CATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCAC 47619
| | | | |||| ||| || || | || || || ||||| || ||||||| | |
Sbjct 308120 CCTCACAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAGGGTTC 308179
Query 47620 TATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTC--AAA 47677
||||| || ||| || |||| | || || | || || | || || | |
Sbjct 308180 CATAATCAATAACTTCGAAGATTTACTTATTCAGTAACTGGGC--CTTAGGACTCTCAGA 308237
Query 47678 AGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCT 47737
| |||| || | |||||| | |||| || ||| | ||| ||
Sbjct 308238 ATGATATCTCGTCAGGATAAAAGCATCTGCTAGAACTTGTACCCCAGCTCGAATGGGATG 308297
Query 47738 ATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTT 47797
|| |||| | || || || ||||| | || || | ||||||||| ||||||||
Sbjct 308298 ATAGCATTTACTTGATAAGCATGCCTCTGGAACAGGGTAGTGGTTTATATCAATAATTTT 308357
Query 47798 ATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCA-AACT-TG 47855
| | | | ||| ||||| ||||| ||| || | ||
Sbjct 308358 ACTCAAGTTTCAAACAATGACTTTAGTGACTTCAGCCAATTTCTTAAAGTCATAAGTGTG 308417
Query 47856 TTATT-TATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATT 47914
|| | | ||||| | |||| | || | | || | ||||| | || |||| ||
Sbjct 308418 TTCTGATGTAACATTCATATTCAAAGCCAAGAAAGCAAAGTTACAAGCCGCAACCTAATC 308477
Query 47915 TGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATT 47974
| | ||||| | || |||||| | || ||||| | ||||||| | |||| ||
Sbjct 308478 TTTGCTGGTATACTCTACTATTTCTGTGCACAGATTGCTGTATTTGATCCTTCCCAGGTT 308537
Query 47975 TTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTC 48034
|| || || | ||||| | || ||| | || || | || || | || ||
Sbjct 308538 CTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGCAGAGTATGTACGGGGTACGTGTCTC 308597
Query 48035 TATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTT 48094
| ||||||| |||||||| | ||||| | ||| |||| |||||| |
Sbjct 308598 TGTCTGAGACTCAATGATGGCAGACCAAAGC-TGCTAATCTTTG--ACAGCTGTGCGGAC 308654
Query 48095 ATTATCATGTTCGTATTTAGT---ATATAACTTCTCAAATTCATCCCCATACACATTATC 48151
| | | |||| | | | | ||||| |||| || |||| || || | || | |||
Sbjct 308655 ACAACCCTGTTTCTCATAACTCTCATATAGCTTCACAGATTCCTCTCCCCAAACTTCATC 308714
Query 48152 TAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGT 48211
| |||||||||||||| || || || || ||||| |||| || | ||| |||| |
Sbjct 308715 CAGACCAGGACATTCATTTGGGCATATAAAAGACCAGTCCTGATTAGTTTCCACTCATTT 308774
Query 48212 CATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAG-TTCTTAGTTCTTCAT 48270
|| ||| | |||||| |||||||| | | || | |||| | | | || || ||| |
Sbjct 308775 CACAAACAGATCTGGAATCCAAAGGACAAAGAAAAGATCCTTGGCATGCTACTT-TTCCT 308833
Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330
| || | ||| | || | | ||| || || | || || |||||| || || | |
Sbjct 308834 TTCCTGTGTTCTTCTTTAAATAAAGGAACTCAAAGATGTCTAAATGCCAAGGCTCCAGGT 308893
Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390
| || || | | | || || | || || || ||| |||| | ||||| || || |||
Sbjct 308894 AAATAGCAAATGCCCCAGGATGCTTGTTTCCACCTGGATCCACATATCAAGCTGTGTTGC 308953
Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450
||| ||| | | | | | |||| ||||| || ||||||| || || | | | || |
Sbjct 308954 TATTTACTTTGAGCCTCAGTACAAAGCCATTGGAATTACCATTAGTCCCAGCAGTGTAGC 309013
Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510
| ||| |||| ||| ||| | | || | | || | || || ||||| || |
Sbjct 309014 TGCCAGTAGCCTGAATACAACTCACAGCAACATCAATTCGTCCAGCAGACTTAGAAATCA 309073
Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570
||||| | || || || |||||||| ||||| || || |||||| ||||||| | |
Sbjct 309074 ATGCACAGTGCTTTAGAGTGTCATAAATGCCTTCAATGCTGTCATCTTTCATATTCAGAA 309133
Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAA-ATAATGTTGGAGATGCA 48629
| |||| || || | ||| || || | | ||||| | || | ||||| |||
Sbjct 309134 GGAAACGGCTGGAAAGTTGTGGGCAGTTGGTACTAGCATTAAGAGAACG--GGAGAGGCA 309191
Query 48630 TGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCA 48688
||| ||||||| ||||| || | | |||||||||| || ||| ||| || || |
Sbjct 309192 TGAGTAAACCACTTCTCAGAAAGAAGGCTATATGTTTCGATTGCAGCATCGATGTCTTCT 309251
Query 48689 TTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA-ACAATTTTGT 48747
|||| | || || | ||| || | ||| ||||||| || ||| ||||| ||| ||||
Sbjct 309252 TTGA-GAATCCCCACAGACACCCTCATCAACATATGCTGTGGTATTTCAGACACTTTT-C 309309
Query 48748 TATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAA 48807
||| |||||||| | ||| || || | | ||||| | ||| || || || || |
Sbjct 309310 CATTGATTTTCAACAAATAGGACCACTCTAGCATCTTAAAGCTAAAGTAATTATAGGAGA 309369
Query 48808 AGTCGTTATCATTAATAATTGATGAATT 48835
| | | |||| ||||| | |||||
Sbjct 309370 AAACTTAGTCATAGATAATGGCAGAATT 309397
>seq260
Length=805401
Score = 217 bits (240), Expect = 2e-51
Identities = 422/615 (69%), Gaps = 15/615 (2%)
Strand=Plus/Plus
Query 18936 GTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACT 18995
|| ||||| ||||| ||| | | || ||| | ||||| || | ||||| ||||| |
Sbjct 242845 GTGTAGAAAGTGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGCCCTCATCTCTGCA 242904
Query 18996 TATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055
|| | |||||| ||||| || | ||||||| |||||||| ||| || | |||||||||
Sbjct 242905 TA--AGTTCATTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCTTGAGCCAGAATAT 242962
Query 19056 AGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTC 19115
|| ||| | || ||||||||||| || |||| ||||| ||| | | || | | |||
Sbjct 242963 TGATGCAGAAGAACCAGAAAAGAAGATTGCTTCCACTGCAGCAGAGGTTACAATACATTC 243022
Query 19116 TCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTAC 19175
| |||| |||| || || | |||||| | || | |||||| || ||| || |
Sbjct 243023 TACATAGGTAGCCTCTTTGTCCCCAATCCAGTGCAAGGACCAATCTGCTGCCTTCTTGAA 243082
Query 19176 ACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATA 19235
||| | ||| | || || | ||| || ||| | | | | | || | |||| |
Sbjct 243083 ACAAGCCATCATTTCAATGGCATTGAAGAGA-AATTCCCTTTCTTTGGAATTTTA----A 243137
Query 19236 TGCATCTATCAATA----AACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAA 19291
|| | |||||||| |||| || ||||| ||||| | ||||| || || || || |
Sbjct 243138 TGTAAATATCAATAAGGCAACTATAGATTTCAGAATGTGTGTTTTCCATGGCAATTTGGA 243197
Query 19292 ATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACT-ACAAAATCTTTCGACCAAA 19350
| || || ||||| | |||||||| ||||| |||| || | ||||| | ||||||
Sbjct 243198 AGCCATAGAAACAGCAGGCTTCTGTAATCTG-ACTTTTCTGGCTAAATCGCTTCACCAAA 243256
Query 19351 TTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGT 19410
|||| ||| ||||| |||||||| ||||||| || || | |||| |||||| |
Sbjct 243257 TTTTTATTTACTATGCCATCACTCACTGCAAAGAAAGCCAGAACATAGGATGTAAAATAT 243316
Query 19411 TTTTCATCTGAGGTTAATGTATT-CCAATCATTAATATCTTTAGATAAATCTACTTCTTC 19469
| || || | | || | | || ||| | | | | || || | | ||| || | ||
Sbjct 243317 CTCTCCTCAG-GTTTCAAGCCTTCCCAGTGCTGAGTGTCCTTGTAAAGATCCACCACCTC 243375
Query 19470 AACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTAT 19529
||| |||||| ||||| || ||||| |||||||| | ||| |||||| || | ||
Sbjct 243376 GGCTGACCAAAAGGAAGCTTCGGCTTTCTTATACATTTGCCAAATATCATAGAATGGAAT 243435
Query 19530 AGGAAATATAACAAA 19544
|||||| || |||||
Sbjct 243436 AGGAAAGATGACAAA 243450
>seq37793
Length=6272
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| |
Sbjct 4349 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 4408
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| |
Sbjct 4409 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 4468
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 4469 CTACAACACGTTCTCC 4484
>seq3013
Length=259453
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| |
Sbjct 181822 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 181881
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| |
Sbjct 181882 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 181941
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 181942 CTACAACACGTTCTCC 181957
>seq7635
Length=151111
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| |||| ||||| || |||| || || || ||||| ||||| || ||
Sbjct 95080 TGAAATTCTCCTGATAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 95139
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
|||||||| || | ||| ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 95140 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 95199
Query 47448 TTTCTTACTCCATA 47461
|||||||| |||||
Sbjct 95200 TTTCTTACACCATA 95213
Score = 98.7 bits (108), Expect = 1e-15
Identities = 123/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| |||||||| ||||||||||| | ||| || | ||||| | ||||| || |
Sbjct 92288 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGTTCAGCAATATAGATGT 92347
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | ||| || || |||||||| || |||||||| ||||||||||| | | || |
Sbjct 92348 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 92407
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
| || | || ||||| || |||||||||| ||| || | ||| || ||
Sbjct 92408 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGG 92456
>seq1401
Length=405806
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | |||||| ||||| || | || ||||| |||||||| || |||
Sbjct 92092 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGTCCTCTCTTCTTT 92151
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| ||||| || ||||| || ||||| || || ||||| ||
Sbjct 92152 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGGCC 92211
Query 19105 ACTAGTCTTTCTCC 19118
|| | ||||| ||
Sbjct 92212 ACAATCCTTTCCCC 92225
>seq120339
Length=683
Score = 89.7 bits (98), Expect = 6e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404
|||||||||||||| || ||||||||||| ||||||||||| ||||| || || |||
Sbjct 553 ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGATA 612
Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTAC 19463
|||| || |||||||| || | | ||||| | | | ||| || |||||||| ||
Sbjct 613 AAATACTTCTCATCTGACGTAAGCCTGTTCCAGTGAGGGAGATCCTTTGATAAATCAAC 671
>seq18778
Length=15734
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732
||||| || | ||||| ||| ||||||||||| ||||| || ||||| || || ||||
Sbjct 7876 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 7817
Query 18733 ATAAAATCAAATGGATTTT 18751
|||||||||||||||||||
Sbjct 7816 ATAAAATCAAATGGATTTT 7798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560847470010960
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