Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq260 183 4e-41 seq37793 116 4e-21 seq3013 116 4e-21 seq1401 114 2e-20 seq80406 86.0 7e-12 >seq260 Length=805401 Score = 183 bits (202), Expect = 4e-41 Identities = 487/728 (67%), Gaps = 17/728 (2%) Strand=Plus/Plus Query 36914 AAAATTTGTCTTTCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATT 36973 ||| || ||||| ||||||||||| ||||| |||||||| ||||| ||||||| | | Sbjct 242608 AAAGTTAGTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAAGGGATTAGCTACTCT 242667 Query 36974 ATATATAGTACTACATGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTT 37033 | | | ||| | | |||| | || ||| || | || | || ||||| | Sbjct 242668 GAAAACCTTGCTAAAACCCAGTTCCAGCCTAAACCTTTCTTCCACGACTTAAATGTAGTG 242727 Query 37034 ACACATTA-GTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATA 37092 ||||| | | | |||| || ||||| || || || || | || || ||| || Sbjct 242728 CTTCATTAAGGTGA-AGTTCATCCCAATGAGCTTCACAGGCAAGGCCTCCCTAAGGAACT 242786 Query 37093 GTTTTTCTATTATTACAGCATCTTTAACTATAT-TAACAATAACTTCTTCAGTTGGGGGA 37151 | |||||| || |||||| ||| ||| | | || | || || | | || Sbjct 242787 CCTGTTCTATCCTTGCAGCATTGGTAATTATTTCTTTCACTCTCTGCT-CTGATGTTTTG 242845 Query 37152 TATTTTAAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTT 37211 | | || | ||| ||| || || ||| | ||||| || || || |||||||| | | Sbjct 242846 TGTAGAAAGTGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGCCCTCATCTCTGCAT 242905 Query 37212 ATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATT 37271 | | |||||| ||||| || | || |||| | |||| ||| || | ||| |||||| Sbjct 242906 A--AGTTCATTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCTTGAGCCAGAATATT 242963 Query 37272 GCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTG-T 37330 | |||| |||| ||||||||||| || |||| ||||| ||| | | ||||| || | | Sbjct 242964 GATGCAGAAGAACCAGAAAAGAAGATTGCTTCCACTGCAGCAGAGGTTACAATACATTCT 243023 Query 37331 ACCGAAAGTTGAACTATAA-TCAGAAATCCAtttttttGTCCAATCTGC--CTTTAATTT 37387 || | || | || | || |||||| | | ||||||||| | || || Sbjct 243024 AC--ATAGGTAGCCTCTTTGTCCCCAATCCAGTGCAAGGACCAATCTGCTGCCTTC--TT 243079 Query 37388 AACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTAT 37447 | ||| | || ||||||| || || |||||||| | |||||| || | | || Sbjct 243080 GAAACAAGCCATCATTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATTT-TAAT 243138 Query 37448 ATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAA 37507 ||| ||||||| || ||||||| |||||||| || | ||||| || || || || || Sbjct 243139 GTAAATATCAATAAGGCAACTATAGATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAA 243198 Query 37508 ACCATAAAAACACCTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGT 37566 ||||| ||||| | ||||| | |||| ||| | | ||| | ||| | || | Sbjct 243199 GCCATAGAAACAGCAGGCTTCTG-TAATCTGACTTTTCTGGCTAAATCGCTTCACCAAAT 243257 Query 37567 TTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTC 37626 ||| ||| ||||| |||||||| ||||||||||||| |||||||| | |||||| || Sbjct 243258 TTTTATTTACTATGCCATCACTCACTGCAAAGAAAGCCAGAACATAGGATGTAAAATATC 243317 Query 37627 TTTCATCA 37634 | || ||| Sbjct 243318 TCTCCTCA 243325 >seq37793 Length=6272 Score = 116 bits (128), Expect = 4e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || ||||| | |||| ||| || Sbjct 4351 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 4410 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||| ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 4411 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 4470 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 4471 ACAACACGT 4479 >seq3013 Length=259453 Score = 116 bits (128), Expect = 4e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || ||||| | |||| ||| || Sbjct 181824 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 181883 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||| ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 181884 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 181943 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 181944 ACAACACGT 181952 >seq1401 Length=405806 Score = 114 bits (126), Expect = 2e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||||||||| | ||||| || | Sbjct 92090 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGTCCTCTCTTCT 92149 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| |||||||| || ||||| | Sbjct 92150 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGG 92209 Query 37318 CTACAA 37323 | |||| Sbjct 92210 CCACAA 92215 >seq80406 Length=1056 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 37429 tttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATAT 37488 |||||| | |||| | || ||||||||||| || | ||||||||||||||| || || | Sbjct 853 TTTCTTTAGAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGT 794 Query 37489 TTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 |||| || || || || || ||||| ||||| | |||||| Sbjct 793 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTC 754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590987685524560