Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq260 183 4e-41
seq37793 116 4e-21
seq3013 116 4e-21
seq1401 114 2e-20
seq80406 86.0 7e-12
>seq260
Length=805401
Score = 183 bits (202), Expect = 4e-41
Identities = 487/728 (67%), Gaps = 17/728 (2%)
Strand=Plus/Plus
Query 36914 AAAATTTGTCTTTCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATT 36973
||| || ||||| ||||||||||| ||||| |||||||| ||||| ||||||| | |
Sbjct 242608 AAAGTTAGTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAAGGGATTAGCTACTCT 242667
Query 36974 ATATATAGTACTACATGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTT 37033
| | | ||| | | |||| | || ||| || | || | || ||||| |
Sbjct 242668 GAAAACCTTGCTAAAACCCAGTTCCAGCCTAAACCTTTCTTCCACGACTTAAATGTAGTG 242727
Query 37034 ACACATTA-GTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATA 37092
||||| | | | |||| || ||||| || || || || | || || ||| ||
Sbjct 242728 CTTCATTAAGGTGA-AGTTCATCCCAATGAGCTTCACAGGCAAGGCCTCCCTAAGGAACT 242786
Query 37093 GTTTTTCTATTATTACAGCATCTTTAACTATAT-TAACAATAACTTCTTCAGTTGGGGGA 37151
| |||||| || |||||| ||| ||| | | || | || || | | ||
Sbjct 242787 CCTGTTCTATCCTTGCAGCATTGGTAATTATTTCTTTCACTCTCTGCT-CTGATGTTTTG 242845
Query 37152 TATTTTAAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTT 37211
| | || | ||| ||| || || ||| | ||||| || || || |||||||| | |
Sbjct 242846 TGTAGAAAGTGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGCCCTCATCTCTGCAT 242905
Query 37212 ATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATT 37271
| | |||||| ||||| || | || |||| | |||| ||| || | ||| ||||||
Sbjct 242906 A--AGTTCATTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCTTGAGCCAGAATATT 242963
Query 37272 GCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTG-T 37330
| |||| |||| ||||||||||| || |||| ||||| ||| | | ||||| || | |
Sbjct 242964 GATGCAGAAGAACCAGAAAAGAAGATTGCTTCCACTGCAGCAGAGGTTACAATACATTCT 243023
Query 37331 ACCGAAAGTTGAACTATAA-TCAGAAATCCAtttttttGTCCAATCTGC--CTTTAATTT 37387
|| | || | || | || |||||| | | ||||||||| | || ||
Sbjct 243024 AC--ATAGGTAGCCTCTTTGTCCCCAATCCAGTGCAAGGACCAATCTGCTGCCTTC--TT 243079
Query 37388 AACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTAT 37447
| ||| | || ||||||| || || |||||||| | |||||| || | | ||
Sbjct 243080 GAAACAAGCCATCATTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATTT-TAAT 243138
Query 37448 ATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAA 37507
||| ||||||| || ||||||| |||||||| || | ||||| || || || || ||
Sbjct 243139 GTAAATATCAATAAGGCAACTATAGATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAA 243198
Query 37508 ACCATAAAAACACCTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGT 37566
||||| ||||| | ||||| | |||| ||| | | ||| | ||| | || |
Sbjct 243199 GCCATAGAAACAGCAGGCTTCTG-TAATCTGACTTTTCTGGCTAAATCGCTTCACCAAAT 243257
Query 37567 TTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTC 37626
||| ||| ||||| |||||||| ||||||||||||| |||||||| | |||||| ||
Sbjct 243258 TTTTATTTACTATGCCATCACTCACTGCAAAGAAAGCCAGAACATAGGATGTAAAATATC 243317
Query 37627 TTTCATCA 37634
| || |||
Sbjct 243318 TCTCCTCA 243325
>seq37793
Length=6272
Score = 116 bits (128), Expect = 4e-21
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
|||||||| || || | |||||| ||||| || | || ||||| | |||| ||| ||
Sbjct 4351 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 4410
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||| ||||||| ||||||||| ||||||||||| || ||||| ||||| ||||| |||
Sbjct 4411 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 4470
Query 37320 ACAAGACGT 37328
|||| ||||
Sbjct 4471 ACAACACGT 4479
>seq3013
Length=259453
Score = 116 bits (128), Expect = 4e-21
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
|||||||| || || | |||||| ||||| || | || ||||| | |||| ||| ||
Sbjct 181824 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 181883
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||| ||||||| ||||||||| ||||||||||| || ||||| ||||| ||||| |||
Sbjct 181884 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 181943
Query 37320 ACAAGACGT 37328
|||| ||||
Sbjct 181944 ACAACACGT 181952
>seq1401
Length=405806
Score = 114 bits (126), Expect = 2e-20
Identities = 101/126 (80%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
|||||||||| || || | |||||| ||||| || | ||||||||| | ||||| || |
Sbjct 92090 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGTCCTCTCTTCT 92149
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | ||| ||||| || ||||||||||| || |||||||| |||||||| || ||||| |
Sbjct 92150 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGG 92209
Query 37318 CTACAA 37323
| ||||
Sbjct 92210 CCACAA 92215
>seq80406
Length=1056
Score = 86.0 bits (94), Expect = 7e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 37429 tttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATAT 37488
|||||| | |||| | || ||||||||||| || | ||||||||||||||| || || |
Sbjct 853 TTTCTTTAGAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGT 794
Query 37489 TTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528
|||| || || || || || ||||| ||||| | ||||||
Sbjct 793 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTC 754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590987685524560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |