Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq8862 201 9e-47 seq40139 143 2e-29 seq17702 143 2e-29 seq12448 134 1e-26 seq131279 127 2e-24 >seq8862 Length=84653 Score = 201 bits (222), Expect = 9e-47 Identities = 294/411 (72%), Gaps = 4/411 (1%) Strand=Plus/Plus Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825 |||||||| |||| || | || |||||| | |||||| | || | |||| |||||| Sbjct 48720 GGGAAAGGTCCTGGT-TCTCGCTGAAGCTGAATTTTCAGCCGCTCAATGTGAGTCAGGTA 48778 Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885 | || || ||||||| | || ||||| || || || | || || |||| ||| || Sbjct 48779 AATATGTGCATCTCCCAAATTATGTACAAAGTCACCTGGCTGCAGGCCCGTGA-GTGCGC 48837 Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 |||||||||||||| || | ||||||| |||||| || || || || || |||||||| Sbjct 48838 GATCATGTACGTGAGCAGTGCATAGCTGGTGATGTTGAAAGGCACGCCCAGGCCCATGTC 48897 Query 29946 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG-TCGCTCACGTAAAACTGACACA 30004 || |||||||||| ||||| || || ||||| ||| || || | ||| | ||| || | Sbjct 48898 TCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCACT-ATGTAGAGCTGGCAGA 48956 Query 30005 TGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30064 || || |||||||| || ||||| || | ||||| || ||||| || ||| || Sbjct 48957 GGGCATGACACGGAGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCATACATGA 49016 Query 30065 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30124 |||| | ||||| ||||| ||| | ||||| ||| | | ||||||||||| || | Sbjct 49017 TGATTCTTCTGTCGTCTGGATTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTA 49076 Query 30125 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAAT 30175 | || | || || | |||| |||| || |||| ||||| || |||| Sbjct 49077 CTCCTTTACCTGAACAATCTGAATTCATATCTTTGTATTCTGCCCCNAAAT 49127 >seq40139 Length=6180 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||||||| || |||||||||||||| || | |||||||||||||| || || Sbjct 1008 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 949 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || ||||| |||||||| || ||||||||||| ||||| || || ||||| |||| | Sbjct 948 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 889 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || ||||||||||| || |||| || Sbjct 888 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAG 845 >seq17702 Length=18075 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||||||| || |||||||||||||| || | |||||||||||||| || || Sbjct 13252 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 13193 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || ||||| |||||||| || ||||||||||| ||||| || || ||||| |||| | Sbjct 13192 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 13133 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || ||||||||||| || |||| || Sbjct 13132 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAG 13089 Score = 129 bits (142), Expect = 5e-25 Identities = 130/169 (77%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| || ||||| ||||| || ||||||||||||||||| || || || || || |||| Sbjct 9630 TCATATCTGTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCGAGGT 9571 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 | || ||| | ||| ||| ||| |||||| |||||||| |||||||||||| | Sbjct 9570 CCCCTTCTACTCTGGTGGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGAACCGTTGGCAT 9511 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||||||| || ||||| ||||| ||||| | |||||||| || Sbjct 9510 CCCAGATCTTCACTCCCTTGGAAGAGAGTTCTTTAGCATTTGTGGATCC 9462 >seq12448 Length=43075 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||||||| || |||||||||||||| || | |||||||||||||| || || Sbjct 9231 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 9290 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || ||||| |||||||| || ||||||||||| ||||| || || ||||| || | | Sbjct 9291 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 9350 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| || || || | || ||||||||||| || |||| || Sbjct 9351 ACGTAGAATTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAG 9394 Score = 129 bits (142), Expect = 5e-25 Identities = 130/169 (77%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| || ||||| ||||| || ||||||||||||||||| || || || || || |||| Sbjct 12945 TCATATCTGTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCGAGGT 13004 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 | || ||| | ||| ||| ||| |||||| |||||||| |||||||||||| | Sbjct 13005 CCCCTTCTACTCTGGTGGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGAACCGTTGGCAT 13064 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||||||| || ||||| ||||| ||||| | |||||||| || Sbjct 13065 CCCAGATCTTCACTCCCTTGGAAGAGAGTTCTTTAGCATTTGTGGATCC 13113 >seq131279 Length=636 Score = 127 bits (140), Expect = 2e-24 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 30199 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 30258 || || ||||| || ||||| ||| ||| ||| ||||||||||||||| ||| Sbjct 1 GGGCCAAGGTCCCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGAA 60 Query 30259 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCT 30318 |||||||| ||||||||||| || ||||| ||||||| ||| | ||||||||| | | Sbjct 61 CCGTTGGCATCCCAGATCTTCACTCCCTTGGAAGAGAGCTTTTTCGTGTTTGTGGATCTT 120 Query 30319 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGG 30378 ||| |||||||||||||| | || | ||||||| || || ||||| || || Sbjct 121 TTGATAAACCACAGCAGCTCTTTCAAAATACCCTTCCAGAACACAGCTTTGGTTGTCAGC 180 Query 30379 AGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACACGGACAAGACTCCC 30438 ||| |||| | | |||||| ||| ||||| | ||||| |||| | ||| Sbjct 181 AGGTGAAATTCATCTCTGAGGCTGTAGTGCGCCTGCAGGCAGAACACCGACAGGGTGCCC 240 Query 30439 GTGCCCGT 30446 |||||||| Sbjct 241 GTGCCCGT 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407723615433122