Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq8862 201 9e-47
seq40139 143 2e-29
seq17702 143 2e-29
seq12448 134 1e-26
seq131279 127 2e-24
>seq8862
Length=84653
Score = 201 bits (222), Expect = 9e-47
Identities = 294/411 (72%), Gaps = 4/411 (1%)
Strand=Plus/Plus
Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825
|||||||| |||| || | || |||||| | |||||| | || | |||| ||||||
Sbjct 48720 GGGAAAGGTCCTGGT-TCTCGCTGAAGCTGAATTTTCAGCCGCTCAATGTGAGTCAGGTA 48778
Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885
| || || ||||||| | || ||||| || || || | || || |||| ||| ||
Sbjct 48779 AATATGTGCATCTCCCAAATTATGTACAAAGTCACCTGGCTGCAGGCCCGTGA-GTGCGC 48837
Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945
|||||||||||||| || | ||||||| |||||| || || || || || ||||||||
Sbjct 48838 GATCATGTACGTGAGCAGTGCATAGCTGGTGATGTTGAAAGGCACGCCCAGGCCCATGTC 48897
Query 29946 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG-TCGCTCACGTAAAACTGACACA 30004
|| |||||||||| ||||| || || ||||| ||| || || | ||| | ||| || |
Sbjct 48898 TCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCACT-ATGTAGAGCTGGCAGA 48956
Query 30005 TGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30064
|| || |||||||| || ||||| || | ||||| || ||||| || ||| ||
Sbjct 48957 GGGCATGACACGGAGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCATACATGA 49016
Query 30065 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30124
|||| | ||||| ||||| ||| | ||||| ||| | | ||||||||||| || |
Sbjct 49017 TGATTCTTCTGTCGTCTGGATTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTA 49076
Query 30125 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAAT 30175
| || | || || | |||| |||| || |||| ||||| || ||||
Sbjct 49077 CTCCTTTACCTGAACAATCTGAATTCATATCTTTGTATTCTGCCCCNAAAT 49127
>seq40139
Length=6180
Score = 143 bits (158), Expect = 2e-29
Identities = 130/164 (79%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||||||| || |||||||||||||| || | |||||||||||||| || ||
Sbjct 1008 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 949
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| ||||| |||||||| || ||||||||||| ||||| || || ||||| |||| |
Sbjct 948 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 889
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
||||| ||||| || | || ||||||||||| || |||| ||
Sbjct 888 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAG 845
>seq17702
Length=18075
Score = 143 bits (158), Expect = 2e-29
Identities = 130/164 (79%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||||||| || |||||||||||||| || | |||||||||||||| || ||
Sbjct 13252 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 13193
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| ||||| |||||||| || ||||||||||| ||||| || || ||||| |||| |
Sbjct 13192 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 13133
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
||||| ||||| || | || ||||||||||| || |||| ||
Sbjct 13132 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAG 13089
Score = 129 bits (142), Expect = 5e-25
Identities = 130/169 (77%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208
|||| || ||||| ||||| || ||||||||||||||||| || || || || || ||||
Sbjct 9630 TCATATCTGTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCGAGGT 9571
Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268
| || ||| | ||| ||| ||| |||||| |||||||| |||||||||||| |
Sbjct 9570 CCCCTTCTACTCTGGTGGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGAACCGTTGGCAT 9511
Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||||||||| || ||||| ||||| ||||| | |||||||| ||
Sbjct 9510 CCCAGATCTTCACTCCCTTGGAAGAGAGTTCTTTAGCATTTGTGGATCC 9462
>seq12448
Length=43075
Score = 134 bits (148), Expect = 1e-26
Identities = 128/164 (78%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||||||| || |||||||||||||| || | |||||||||||||| || ||
Sbjct 9231 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 9290
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| ||||| |||||||| || ||||||||||| ||||| || || ||||| || | |
Sbjct 9291 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 9350
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
||||| || || || | || ||||||||||| || |||| ||
Sbjct 9351 ACGTAGAATTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAG 9394
Score = 129 bits (142), Expect = 5e-25
Identities = 130/169 (77%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208
|||| || ||||| ||||| || ||||||||||||||||| || || || || || ||||
Sbjct 12945 TCATATCTGTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCGAGGT 13004
Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268
| || ||| | ||| ||| ||| |||||| |||||||| |||||||||||| |
Sbjct 13005 CCCCTTCTACTCTGGTGGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGAACCGTTGGCAT 13064
Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||||||||| || ||||| ||||| ||||| | |||||||| ||
Sbjct 13065 CCCAGATCTTCACTCCCTTGGAAGAGAGTTCTTTAGCATTTGTGGATCC 13113
>seq131279
Length=636
Score = 127 bits (140), Expect = 2e-24
Identities = 177/248 (71%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 30199 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 30258
|| || ||||| || ||||| ||| ||| ||| ||||||||||||||| |||
Sbjct 1 GGGCCAAGGTCCCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGAA 60
Query 30259 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCT 30318
|||||||| ||||||||||| || ||||| ||||||| ||| | ||||||||| | |
Sbjct 61 CCGTTGGCATCCCAGATCTTCACTCCCTTGGAAGAGAGCTTTTTCGTGTTTGTGGATCTT 120
Query 30319 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGG 30378
||| |||||||||||||| | || | ||||||| || || ||||| || ||
Sbjct 121 TTGATAAACCACAGCAGCTCTTTCAAAATACCCTTCCAGAACACAGCTTTGGTTGTCAGC 180
Query 30379 AGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACACGGACAAGACTCCC 30438
||| |||| | | |||||| ||| ||||| | ||||| |||| | |||
Sbjct 181 AGGTGAAATTCATCTCTGAGGCTGTAGTGCGCCTGCAGGCAGAACACCGACAGGGTGCCC 240
Query 30439 GTGCCCGT 30446
||||||||
Sbjct 241 GTGCCCGT 248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 407723615433122
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |