Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3413 181 2e-40 seq8699 145 1e-29 seq1133 93.3 8e-14 >seq3413 Length=235377 Score = 181 bits (200), Expect = 2e-40 Identities = 186/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||| || || ||||||||||| Sbjct 48974 AGCAGCTGGCAGCCATTGCTGACGTGGGTCATGACCTTCTGCTTCAGCTGGGCCACCTGC 49033 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | |||||| | ||||| || ||||| || | ||||||| |||||| Sbjct 49034 TCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCACC 49093 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 49094 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 49153 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || || | |||||||| |||||||| ||||||| ||| || Sbjct 49154 CGGTTCCGCAGCCGCTTGCGCTCGACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 49213 Query 241625 GAC 241627 ||| Sbjct 49214 GAC 49216 >seq8699 Length=87180 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| || ||||| | | |||||| | ||| Sbjct 49541 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCGGTGGACGCCAGC 49482 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| |||||| |||||||| || |||| |||||| ||||| Sbjct 49481 TCCGTGTTCTGGCTCTTGAGCGTCTTCACCTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 49422 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 49421 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 49362 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||||||||| ||||| ||||| || ||| Sbjct 49361 ATGCGTTCCTGCGTGTCCATATCGATGGGCGAC 49329 >seq1133 Length=449847 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 230067 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 230126 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 230127 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 230186 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 230187 ATGGGGGAC 230195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929442510261760