Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq4934 268 1e-66 seq26565 120 3e-22 seq964 120 3e-22 seq917 102 9e-17 >seq4934 Length=300703 Score = 268 bits (296), Expect = 1e-66 Identities = 654/985 (66%), Gaps = 11/985 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| |||||| | ||| ||||| |||| || ||||| || Sbjct 80211 CAGATGCTCATCCAAACACTGGATGGCGAAGAGGTCGACGTCCACGTCAAACTTATTGGC 80152 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| |||||| | | || ||||||| | ||| || | || || || || || Sbjct 80151 AAACAAGTGGTGATGGCGC---AGCATCCAGTTTAAGTCGCCAGCTCCAAAGACACACAC 80095 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| || || ||||| || ||||| |||| || || | || || || || Sbjct 80094 TGAGCGCACGTGGACCCCATTGCAGGGTGGGTAGGGAGCACCCTTGGAAACATCCCCCTC 80035 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| |||||||| || | |||||||||||| || ||||||||| | Sbjct 80034 AAAGTACTGCCACTTGACAAACCTAGCAACCGCCTGCATGTCAGACAAGTCGTATTTATG 79975 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | ||| || | |||||| | |||| || | || | ||| ||||| || | || Sbjct 79974 GCTTAAGGAGAGTGAGCCCGGGA-CTTCGGGGATCCTTTGGATGGTAGCCCAGAGATATT 79916 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCA 160410 | || |||||||| || || | | ||| ||||| |||| | |||| | | | Sbjct 79915 CATCTGGGCTGTAAGTATCTTGTGCCCACTCCATAAACTTTTGGATTTTTTCATTCTCTA 79856 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | || | || || || | || ||||| || || ||||| || || | ||| Sbjct 79855 GCACATACCCCACATATTCCCTACTGACCACAAAATAGGCACTGCCTGAAAAAAGAGGTG 79796 Query 160471 TGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | | || || | |||| || ||||| || | ||| || || | Sbjct 79795 TTTCAAGTGGGGGATGCTTTTTGATAGTCCCCGTGTTGATCAGCTTTCCATTAACGATTA 79736 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 | || || |||||||| | || | | |||||| || || || || ||| Sbjct 79735 CAAAACGTTTTTTCCACCTTTCTTCTTTATTGGATGGCATCTTCTCGGTTTCGAGGTTGT 79676 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | |||| || || || |||| |||| || |||| ||| || || | ||||| | Sbjct 79675 TTTCACCCATGAATGACTTGAGCTTTCTGACAATTTCTAAGTTGGTTTTAATAGGAAAAT 79616 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710 | |||| || | ||||||| ||| ||||| | |||| ||| |||||| ||| Sbjct 79615 CCATACCACAAAGATTTATCAAGTATTTCCAGGCTGTACTCATTCCGTAGAGGTCCTTCA 79556 Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770 |||| || | || ||||| || | | |||||| || || | || |||| | | || Sbjct 79555 TGCAGTTGAGGTCCGCCTGGACCCTACCCCAGGATGCATAAATCACACTCTCCAACTGAC 79496 Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACC---GCCAGAAAGAACA 160827 ||||||||||||||||| |||||| ||| | || |||| |||| || | |||| | | Sbjct 79495 TGGCCACAAAGACGTTACTGAAACAGGACGCAATGCCCATCACCGCAGCTAAAAAGGA-A 79437 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 || || | ||| ||||||||| | |||||| | ||||||||| || ||||||| Sbjct 79436 TC--CTCTGATTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCATATAAATGGCCC 79379 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| || | ||| || || || ||||| | ||| || || || || || |||| Sbjct 79378 TCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATGGAATATGCAATTGGAA 79319 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 |||| | ||| || ||| |||| | | || || ||| ||||||| ||| | Sbjct 79318 ACTCCGCCTCTTCTTTACTAAGGGGTTCTACGATATATTTACGCCTCTTGATGAAAGCAC 79259 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 |||| || || |||||||| | ||| Sbjct 79258 CACAGTCGCGGGTCATGTTTACATA 79234 >seq26565 Length=8755 Score = 120 bits (132), Expect = 3e-22 Identities = 159/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 ||||||| | || | ||||| |||| || || |||| ||| |||||||| || Sbjct 8733 GTTTGCCTGAAGTTGGACACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTC 8677 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || |||||||| || ||||| ||||| | ||||| || ||| ||| || ||||| Sbjct 8676 CCCACCTGACTCTTGGGGTCTTTGACTTGGAGGATGCTGGTGACAGATGTGGTCCCATTT 8617 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | ||| | | | | || || |||||||||||||| || || ||||||||| | || Sbjct 8616 GGGTGTGAGAGACTCTCAGTACTATTCTCAATCCCTGACCCAGCAACCTTCCAGGAGATC 8557 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 || || || || || || || || |||||||| ||||||| Sbjct 8556 ACGGGGGCTGGGCGGGCAGTGGCGGAGCAGGTGATATTTA 8517 >seq964 Length=529263 Score = 120 bits (132), Expect = 3e-22 Identities = 159/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 ||||||| | || | ||||| |||| || || |||| ||| |||||||| || Sbjct 300473 GTTTGCCTGAAGTTGGACACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTC 300417 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || |||||||| || ||||| ||||| | ||||| || ||| ||| || ||||| Sbjct 300416 CCCACCTGACTCTTGGGGTCTTTGACTTGGAGGATGCTGGTGACAGATGTGGTCCCATTT 300357 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | ||| | | | | || || |||||||||||||| || || ||||||||| | || Sbjct 300356 GGGTGTGAGAGACTCTCAGTACTATTCTCAATCCCTGACCCAGCAACCTTCCAGGAGATC 300297 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 || || || || || || || || |||||||| ||||||| Sbjct 300296 ACGGGGGCTGGGCGGGCAGTGGCGGAGCAGGTGATATTTA 300257 >seq917 Length=512978 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 158022 AGATACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 158081 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| || || || || | ||| | ||||| | | || Sbjct 158082 GGAATATAATTCTCATAGTTTTCCCTAGATGGCCCCAGAACAACGGGTACAGAGCCAGCC 158141 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||||| |||||| || |||| |||||||||||||| | Sbjct 158142 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAA 158201 Query 176412 AAATAGAACTTACA 176425 | ||| || ||||| Sbjct 158202 AGATAAAATTTACA 158215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575923963406640