Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq5167 96.9 6e-15
seq4376 89.7 9e-13
seq50868 87.8 3e-12
seq19457 87.8 3e-12
seq1968 87.8 3e-12
seq633 87.8 3e-12
>seq5167
Length=254018
Score = 96.9 bits (106), Expect = 6e-15
Identities = 133/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237
||| |||||||| || || || | ||| || | ||| || || ||| | || | |||
Sbjct 220532 AATGTTATAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAGAGATCAGTCT 220591
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
|| ||||||||||| |||||||| ||||| || || |||| |||| |||| || ||
Sbjct 220592 TTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGT 220651
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
||| | | ||||| || ||||| || || || || | | |||||||| || || ||
Sbjct 220652 ATCCAAGGGTTCAACCTCAAGAGTGATGGTCTTCCCCATAAAGGTTTTTACGAAAATCTG 220711
Query 193358 CATTTT 193363
||| ||
Sbjct 220712 CATCTT 220717
>seq4376
Length=192284
Score = 89.7 bits (98), Expect = 9e-13
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || | ||| || || ||||| | | ||| || ||||||||||| |||||||| ||
Sbjct 63506 ATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 63565
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
||| || || |||| |||| |||| || ||||| || | |||| || ||| | ||
Sbjct 63566 ATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGTTCAATGTCAAGAATGAT 63625
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || || || ||||||| || || ||||| ||
Sbjct 63626 GGTCTTTCCCGTAAGGGTTTTTATGAAAATCTGCATCTT 63664
>seq50868
Length=3469
Score = 87.8 bits (96), Expect = 3e-12
Identities = 131/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237
||| |||||||| || || || | ||| || | || || || ||||| || | |||
Sbjct 2078 AATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTGCTTACCAGCAAAGATCAGTCT 2019
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
|| ||||||||||| |||||||| ||||| || || || | |||| |||| || ||
Sbjct 2018 TTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTAGCCTTTACATTTTCTATTGT 1959
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
||| || | ||| || ||||| ||||| | || | || ||||||| || || ||
Sbjct 1958 ATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCATAAGGGTTTTTATGAAAATCTG 1899
Query 193358 CATTTT 193363
||| ||
Sbjct 1898 CATCTT 1893
>seq19457
Length=14611
Score = 87.8 bits (96), Expect = 3e-12
Identities = 131/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237
||| |||||||| || || || | ||| || | || || || ||||| || | |||
Sbjct 1969 AATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTGCTTACCAGCAAAGATCAGTCT 2028
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
|| ||||||||||| |||||||| ||||| || || || | |||| |||| || ||
Sbjct 2029 TTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTAGCCTTTACATTTTCTATTGT 2088
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
||| || | ||| || ||||| ||||| | || | || ||||||| || || ||
Sbjct 2089 ATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCATAAGGGTTTTTATGAAAATCTG 2148
Query 193358 CATTTT 193363
||| ||
Sbjct 2149 CATCTT 2154
>seq1968
Length=337473
Score = 87.8 bits (96), Expect = 3e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 193214 TTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTAT 193273
||| || || ||||| |||| ||| || ||||||||||| |||||||| ||||| || ||
Sbjct 164888 TTGGTTGCCAGCAAAGATTACTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 164947
Query 193274 TTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACC 193333
|||| |||| |||| | ||| | || | ||| ||||||||| || || || |
Sbjct 164948 CTTGGCCTTTACATTTTCTGTTGTACCTGAGGGTTCAGCTTCTAGAGCCATGGTCTTCCT 165007
Query 193334 TGTTAGCGTTTTTACAAATATTTGCATTTTATTAGT 193369
| || ||||||| || || ||||| || ||||
Sbjct 165008 CATAAGGGTTTTTATGAAAATCTGCATCTTGGTAGT 165043
>seq633
Length=582679
Score = 87.8 bits (96), Expect = 3e-12
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| |||||||| | || || ||||| ||||| || | |||||| || || || ||
Sbjct 204317 ATCCCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCA 204376
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| | || | ||| || | || || || ||||| || | ||||| || |||||
Sbjct 204377 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGG 204436
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||||||||| || || |||| || | ||| || || || | |||
Sbjct 204437 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCC 204496
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| || || || || || || || || || || || || |||||||||||
Sbjct 204497 ACTTCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAAATTTGCATTTT 204549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 897635643000480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |