Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5167 96.9 6e-15 seq4376 89.7 9e-13 seq50868 87.8 3e-12 seq19457 87.8 3e-12 seq1968 87.8 3e-12 seq633 87.8 3e-12 >seq5167 Length=254018 Score = 96.9 bits (106), Expect = 6e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| |||||||| || || || | ||| || | ||| || || ||| | || | ||| Sbjct 220532 AATGTTATAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAGAGATCAGTCT 220591 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 || ||||||||||| |||||||| ||||| || || |||| |||| |||| || || Sbjct 220592 TTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGT 220651 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| | | ||||| || ||||| || || || || | | |||||||| || || || Sbjct 220652 ATCCAAGGGTTCAACCTCAAGAGTGATGGTCTTCCCCATAAAGGTTTTTACGAAAATCTG 220711 Query 193358 CATTTT 193363 ||| || Sbjct 220712 CATCTT 220717 >seq4376 Length=192284 Score = 89.7 bits (98), Expect = 9e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || ||||| | | ||| || ||||||||||| |||||||| || Sbjct 63506 ATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 63565 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| |||| |||| || ||||| || | |||| || ||| | || Sbjct 63566 ATCCTGGATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGTTCAATGTCAAGAATGAT 63625 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || ||||||| || || ||||| || Sbjct 63626 GGTCTTTCCCGTAAGGGTTTTTATGAAAATCTGCATCTT 63664 >seq50868 Length=3469 Score = 87.8 bits (96), Expect = 3e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| |||||||| || || || | ||| || | || || || ||||| || | ||| Sbjct 2078 AATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTGCTTACCAGCAAAGATCAGTCT 2019 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 || ||||||||||| |||||||| ||||| || || || | |||| |||| || || Sbjct 2018 TTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTAGCCTTTACATTTTCTATTGT 1959 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | ||| || ||||| ||||| | || | || ||||||| || || || Sbjct 1958 ATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCATAAGGGTTTTTATGAAAATCTG 1899 Query 193358 CATTTT 193363 ||| || Sbjct 1898 CATCTT 1893 >seq19457 Length=14611 Score = 87.8 bits (96), Expect = 3e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| |||||||| || || || | ||| || | || || || ||||| || | ||| Sbjct 1969 AATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTGCTTACCAGCAAAGATCAGTCT 2028 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 || ||||||||||| |||||||| ||||| || || || | |||| |||| || || Sbjct 2029 TTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTAGCCTTTACATTTTCTATTGT 2088 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | ||| || ||||| ||||| | || | || ||||||| || || || Sbjct 2089 ATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCATAAGGGTTTTTATGAAAATCTG 2148 Query 193358 CATTTT 193363 ||| || Sbjct 2149 CATCTT 2154 >seq1968 Length=337473 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193214 TTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTAT 193273 ||| || || ||||| |||| ||| || ||||||||||| |||||||| ||||| || || Sbjct 164888 TTGGTTGCCAGCAAAGATTACTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 164947 Query 193274 TTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACC 193333 |||| |||| |||| | ||| | || | ||| ||||||||| || || || | Sbjct 164948 CTTGGCCTTTACATTTTCTGTTGTACCTGAGGGTTCAGCTTCTAGAGCCATGGTCTTCCT 165007 Query 193334 TGTTAGCGTTTTTACAAATATTTGCATTTTATTAGT 193369 | || ||||||| || || ||||| || |||| Sbjct 165008 CATAAGGGTTTTTATGAAAATCTGCATCTTGGTAGT 165043 >seq633 Length=582679 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| | || || ||||| ||||| || | |||||| || || || || Sbjct 204317 ATCCCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCA 204376 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || ||||| || | ||||| || ||||| Sbjct 204377 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGG 204436 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || || |||| || | ||| || || || | ||| Sbjct 204437 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCC 204496 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || || || || || || || || || || || ||||||||||| Sbjct 204497 ACTTCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAAATTTGCATTTT 204549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897635643000480