Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq50868 104 5e-17
seq19457 104 5e-17
seq1968 102 2e-16
seq1192 98.7 2e-15
seq633 87.8 4e-12
seq1774 84.2 4e-11
>seq50868
Length=3469
Score = 104 bits (114), Expect = 5e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| ||||| ||||| || || | | |||| || | || |||||||||||||| | |||
Sbjct 2077 ATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTGCTTACCAGCAAAGATCAGTCTT 2018
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| |||||||| || |||||||| ||||| || || ||| |||||||| ||| | |
Sbjct 2017 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTAGCCTTTACATTTTCTATTGTA 1958
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
||||| | ||| || ||||| || || | || | | ||||| || || ||||||
Sbjct 1957 TCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCATAAGGGTTTTTATGAAAATCTGC 1898
Query 192535 ATTTT 192539
|| ||
Sbjct 1897 ATCTT 1893
>seq19457
Length=14611
Score = 104 bits (114), Expect = 5e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| ||||| ||||| || || | | |||| || | || |||||||||||||| | |||
Sbjct 1970 ATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTGCTTACCAGCAAAGATCAGTCTT 2029
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| |||||||| || |||||||| ||||| || || ||| |||||||| ||| | |
Sbjct 2030 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTAGCCTTTACATTTTCTATTGTA 2089
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
||||| | ||| || ||||| || || | || | | ||||| || || ||||||
Sbjct 2090 TCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCATAAGGGTTTTTATGAAAATCTGC 2149
Query 192535 ATTTT 192539
|| ||
Sbjct 2150 ATCTT 2154
>seq1968
Length=337473
Score = 102 bits (112), Expect = 2e-16
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418
|||| ||||| || | || ||| |||| ||| || ||||||||||||| ||| || |
Sbjct 164857 TATAGTCAGACAAAATATGTACATTTTCCAGTTGGTTGCCAGCAAAGATTACTCTTTGCT 164916
Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478
||||||| || |||||||| ||||| || || || |||||||| | | | | |||
Sbjct 164917 GATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTACCTG 164976
Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538
| | ||| ||||||||| ||||| || | | | ||||| || || |||||||| |
Sbjct 164977 AGGGTTCAGCTTCTAGAGCCATGGTCTTCCTCATAAGGGTTTTTATGAAAATCTGCATCT 165036
Query 192539 T 192539
|
Sbjct 165037 T 165037
>seq1192
Length=438698
Score = 98.7 bits (108), Expect = 2e-15
Identities = 135/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| |||| || | | || || ||| |||| |||| ||| |||||||||||||| | |||
Sbjct 85803 ATGTTATGATGAAACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTT 85862
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| |||||||| || |||||||| ||||| || | || ||||| || | | | |
Sbjct 85863 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTACGTTTTCTGTTGTA 85922
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTT-TAATAAATATCTG 192533
||||| | ||| || || ||||| ||||| || || ||| |||| | | || |||||
Sbjct 85923 TCTGAGGGTTCAACCTCAAGAGTGATGGTCTT-CCCCATAAGGTTTCTTAGGAAAATCTG 85981
Query 192534 CATTTT 192539
||| ||
Sbjct 85982 CATCTT 85987
>seq633
Length=582679
Score = 87.8 bits (96), Expect = 4e-12
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| |||||||| ||||| | || | || || || | |||||| ||| || ||||||
Sbjct 204317 ATCCCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCA 204376
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| |||| || || || |||||||| | ||||| || |||||
Sbjct 204377 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGG 204436
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||||||||| || || || || ||||| || | || | ||
Sbjct 204437 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCC 204496
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
||||| || || ||||| || || || | || || | || || ||||||||
Sbjct 204497 ACTTCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAAATTTGCATTTT 204549
>seq1774
Length=358375
Score = 84.2 bits (92), Expect = 4e-11
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| ||||||||||| || || ||| |||| |||| ||| |||||||||||||| | |||
Sbjct 323348 ATGTTATAATCAGACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTT 323289
Query 192415 TGTTGATCAGGTGGTATTCCT 192435
|| |||||||| || ||||||
Sbjct 323288 TGCTGATCAGGAGGAATTCCT 323268
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982215673233900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |