Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq50868 104 5e-17 seq19457 104 5e-17 seq1968 102 2e-16 seq1192 98.7 2e-15 seq633 87.8 4e-12 seq1774 84.2 4e-11 >seq50868 Length=3469 Score = 104 bits (114), Expect = 5e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || ||||| ||||| || || | | |||| || | || |||||||||||||| | ||| Sbjct 2077 ATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTGCTTACCAGCAAAGATCAGTCTT 2018 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || |||||||| || |||||||| ||||| || || ||| |||||||| ||| | | Sbjct 2017 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTAGCCTTTACATTTTCTATTGTA 1958 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| | ||| || ||||| || || | || | | ||||| || || |||||| Sbjct 1957 TCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCATAAGGGTTTTTATGAAAATCTGC 1898 Query 192535 ATTTT 192539 || || Sbjct 1897 ATCTT 1893 >seq19457 Length=14611 Score = 104 bits (114), Expect = 5e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || ||||| ||||| || || | | |||| || | || |||||||||||||| | ||| Sbjct 1970 ATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTGCTTACCAGCAAAGATCAGTCTT 2029 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || |||||||| || |||||||| ||||| || || ||| |||||||| ||| | | Sbjct 2030 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTAGCCTTTACATTTTCTATTGTA 2089 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| | ||| || ||||| || || | || | | ||||| || || |||||| Sbjct 2090 TCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCATAAGGGTTTTTATGAAAATCTGC 2149 Query 192535 ATTTT 192539 || || Sbjct 2150 ATCTT 2154 >seq1968 Length=337473 Score = 102 bits (112), Expect = 2e-16 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 |||| ||||| || | || ||| |||| ||| || ||||||||||||| ||| || | Sbjct 164857 TATAGTCAGACAAAATATGTACATTTTCCAGTTGGTTGCCAGCAAAGATTACTCTTTGCT 164916 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 ||||||| || |||||||| ||||| || || || |||||||| | | | | ||| Sbjct 164917 GATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTACCTG 164976 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | | ||| ||||||||| ||||| || | | | ||||| || || |||||||| | Sbjct 164977 AGGGTTCAGCTTCTAGAGCCATGGTCTTCCTCATAAGGGTTTTTATGAAAATCTGCATCT 165036 Query 192539 T 192539 | Sbjct 165037 T 165037 >seq1192 Length=438698 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || |||| || | | || || ||| |||| |||| ||| |||||||||||||| | ||| Sbjct 85803 ATGTTATGATGAAACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTT 85862 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || |||||||| || |||||||| ||||| || | || ||||| || | | | | Sbjct 85863 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTACGTTTTCTGTTGTA 85922 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTT-TAATAAATATCTG 192533 ||||| | ||| || || ||||| ||||| || || ||| |||| | | || ||||| Sbjct 85923 TCTGAGGGTTCAACCTCAAGAGTGATGGTCTT-CCCCATAAGGTTTCTTAGGAAAATCTG 85981 Query 192534 CATTTT 192539 ||| || Sbjct 85982 CATCTT 85987 >seq633 Length=582679 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || | || || || | |||||| ||| || |||||| Sbjct 204317 ATCCCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCA 204376 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || || |||||||| | ||||| || ||||| Sbjct 204377 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGG 204436 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || || || ||||| || | || | || Sbjct 204437 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCC 204496 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || || ||||| || || || | || || | || || |||||||| Sbjct 204497 ACTTCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAAATTTGCATTTT 204549 >seq1774 Length=358375 Score = 84.2 bits (92), Expect = 4e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || ||||||||||| || || ||| |||| |||| ||| |||||||||||||| | ||| Sbjct 323348 ATGTTATAATCAGACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTT 323289 Query 192415 TGTTGATCAGGTGGTATTCCT 192435 || |||||||| || |||||| Sbjct 323288 TGCTGATCAGGAGGAATTCCT 323268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982215673233900