Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq50868 98.7 2e-15 seq19457 98.7 2e-15 seq1192 93.3 8e-14 >seq50868 Length=3469 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 ||| | ||| | ||| || ||| ||||| || || |||| | | | || || | || Sbjct 2099 ATGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTG 2040 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 ||||||||||| || | ||| || || ||||| || |||||||| ||||| || || || Sbjct 2039 CTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 1980 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 | |||||||| ||| |||||||| | ||| || ||||| || || | || | Sbjct 1979 AGCCTTTACATTTTCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCAT 1920 Query 172046 TAATGTTTTAATGAATATCTGCATTTT 172072 | ||||| ||||| |||||||| || Sbjct 1919 AAGGGTTTTTATGAAAATCTGCATCTT 1893 >seq19457 Length=14611 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 ||| | ||| | ||| || ||| ||||| || || |||| | | | || || | || Sbjct 1948 ATGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTG 2007 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 ||||||||||| || | ||| || || ||||| || |||||||| ||||| || || || Sbjct 2008 CTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 2067 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 | |||||||| ||| |||||||| | ||| || ||||| || || | || | Sbjct 2068 AGCCTTTACATTTTCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCAT 2127 Query 172046 TAATGTTTTAATGAATATCTGCATTTT 172072 | ||||| ||||| |||||||| || Sbjct 2128 AAGGGTTTTTATGAAAATCTGCATCTT 2154 >seq1192 Length=438698 Score = 93.3 bits (102), Expect = 8e-14 Identities = 167/241 (69%), Gaps = 5/241 (2%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| ||||| || || | | | ||| | ||| || ||| || Sbjct 85751 TTTCTTAGCACCACCATGAAGTCTCAACACAAGAAG---AGTTGACTCCTTCTGAATGTT 85807 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || | |||| ||| | || |||| ||| ||||||||||| || | ||| || || Sbjct 85808 ATGATGAAACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTG 85867 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || | || ||||| || | | |||||||| Sbjct 85868 ATCAGGAGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTACGTTTTCTGTTGTATCTGA 85927 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTT-TAATGAATATCTGCATTT 172071 | ||| || || ||||| ||||| || || ||| |||| | | ||| |||||||| | Sbjct 85928 GGGTTCAACCTCAAGAGTGATGGTCTT-CCCCATAAGGTTTCTTAGGAAAATCTGCATCT 85986 Query 172072 T 172072 | Sbjct 85987 T 85987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903104942701200