Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1029 127 2e-24 seq50868 107 2e-18 seq19457 107 2e-18 seq4376 102 7e-17 seq5167 100 3e-16 seq1701 86.0 6e-12 >seq1029 Length=469353 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 371838 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 371779 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 371778 TGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCTGACCA 371719 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||| |||||||||||||| ||| | | | |||| || || || Sbjct 371718 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 371659 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| || || || || || |||||||| |||| ||| | || || Sbjct 371658 CATTCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGTGG 371611 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || || ||||| || || || || ||||| || || || Sbjct 372980 ACAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCC 372921 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||||||||| || || || || || || Sbjct 372920 AGTGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGAC 372861 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||| || |||||||||||||| ||| | | | |||| || || Sbjct 372860 CAGCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTAC 372801 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| || || || || || | ||| ||||| Sbjct 372800 AACATCCAGAAAGAGTCCACCTTGCACCTGGTG 372768 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 372066 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 372007 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 372006 TGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCTGACCA 371947 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| || |||||||||||||| ||| | | | |||| || || || Sbjct 371946 GCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 371887 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || || || || || | ||| ||||| Sbjct 371886 CATCCAGAAAGAGTCCACCTTGCACCTGGTG 371856 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 372294 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 372235 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 372234 TGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 372175 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| || |||||||||||||| ||| | | | |||| || || || Sbjct 372174 GCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 372115 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || || || || || | ||| ||||| Sbjct 372114 CATCCAGAAAGAGTCCACCTTGCACCTGGTG 372084 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 372522 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 372463 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 372462 TGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 372403 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| || |||||||||||||| ||| | | | |||| || || || Sbjct 372402 GCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 372343 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || || || || || | ||| ||||| Sbjct 372342 CATCCAGAAAGAGTCCACCTTGCACCTGGTG 372312 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 372750 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 372691 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 372690 TGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 372631 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| || |||||||||||||| ||| | | | |||| || || || Sbjct 372630 GCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 372571 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || || || || || | ||| ||||| Sbjct 372570 CATCCAGAAAGAGTCCACCTTGCACCTGGTG 372540 >seq50868 Length=3469 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || ||||| || | || | ||||| || || || ||| || | Sbjct 1895 GATGCAGATTTTCATAAAAACCCTTATGGGGAGGACTATCACTCTTGAGTCTGAACCCTC 1954 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 1955 AGATACAATAGAAAATGTAAAGGCTAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 2014 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| || || || || || ||| | | |||| || ||||| Sbjct 2015 GCAAAGACTGATCTTTGCTGGTAAGCACCTCGAAGATGGATGTACTTTGTCTGACTATAA 2074 Query 24883 CATTCAAAAGGAATCGACACTACA 24906 |||||| ||||| || || || || Sbjct 2075 CATTCAGAAGGAGTCAACTCTTCA 2098 >seq19457 Length=14611 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || ||||| || | || | ||||| || || || ||| || | Sbjct 2152 GATGCAGATTTTCATAAAAACCCTTATGGGGAGGACTATCACTCTTGAGTCTGAACCCTC 2093 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 2092 AGATACAATAGAAAATGTAAAGGCTAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 2033 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| || || || || || ||| | | |||| || ||||| Sbjct 2032 GCAAAGACTGATCTTTGCTGGTAAGCACCTCGAAGATGGATGTACTTTGTCTGACTATAA 1973 Query 24883 CATTCAAAAGGAATCGACACTACA 24906 |||||| ||||| || || || || Sbjct 1972 CATTCAGAAGGAGTCAACTCTTCA 1949 >seq4376 Length=192284 Score = 102 bits (112), Expect = 7e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || ||||| || || || || || || | || || | ||| || | Sbjct 63662 GATGCAGATTTTCATAAAAACCCTTACGGGAAAGACCATCATTCTTGACATTGAACCCTC 63603 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| ||| || ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 63602 GGATACAATAGGAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 63543 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||| |||||| || || || ||||| ||| || || | |||||||| Sbjct 63542 GCAAAGACTGACCTTTGCTGGCAAGCAACTGGAAGATG-GATGTACTTT---GATTATAA 63487 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||| ||| | ||||| || | | |||||| || Sbjct 63486 CATTCAGAAGAAGTCGACTCTTCCTCTTGTGTTGAGA 63450 >seq5167 Length=254018 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| | | || || || || || || || || ||| || Sbjct 220715 GATGCAGATTTTCGTAAAAACCTTTATGGGGAAGACCATCACTCTTGAGGTTGAACCCTT 220656 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 220655 GGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 220596 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||| ||| || || || ||||| ||| | | |||| || ||||| Sbjct 220595 GCAAAGACTGATCTCTGCTGGTAAGCAACTGGAAGATGGACGTACTTTGTCTGACTATAA 220536 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 |||||| ||||| || | || || | ||||| Sbjct 220535 CATTCAGAAGGAGTCAAATCTTCATCTTGTGTT 220503 >seq1701 Length=366390 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/215 (70%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | || || || | || || || ||| | ||||| || | ||| Sbjct 285409 GATGCA-ATCTTTGTAAAGACCCTGATGGGCAAGACCATTTCCCTCGAGGTCAAGCCCAG 285467 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| | || | || | ||||| |||||||||| || || || || || || | Sbjct 285468 TGACAGCATCGAGAATGTCAGTCAAAA--TCCAAGACAAGGAGGGCATTCCACCTGACTA 285525 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTATA 24881 | |||| |||| ||||| || |||||||||||||| | | | || | ||||| || | Sbjct 285526 GCCACGTCTGATGTTTGCGGGCAAACAGCTGGAGGA-TGGCTACACTCTTTCAGACTACA 285584 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 ||| || ||||| || || || ||||||||| || Sbjct 285585 ACAGCCAGAAGGAGTCCACCCTGCACTTGGTGCTG 285619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448888063527920