Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1029 149 4e-31 seq1701 104 2e-17 seq9005 95.1 8e-15 seq5167 95.1 8e-15 seq633 95.1 8e-15 >seq1029 Length=469353 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | |||||||| ||| | ||| ||| ||||||||||| ||||| || Sbjct 371611 CCACCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGAC 371670 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| || || || || ||||||| | |||||||| | || Sbjct 371671 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGG 371730 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | |||||||||||| | || || |||||| | || | ||| ||| |||||| Sbjct 371731 ATCCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 371790 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 371791 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 371837 Score = 140 bits (154), Expect = 2e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 371854 AGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 371913 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || || |||||||||| | |||||||| | || | |||||||||||| Sbjct 371914 TCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCT 371973 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| ||| |||||| || | ||| |||||| Sbjct 371974 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 372033 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||||||||| Sbjct 372034 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 372065 Score = 140 bits (154), Expect = 2e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 372766 AGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 372825 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || || |||||||||| | |||||||| | || | ||||||||||| Sbjct 372826 TCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 372885 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| ||| |||||| || | ||| |||||| Sbjct 372886 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 372945 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| |||||||||||||| Sbjct 372946 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 372977 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 372082 AGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 372141 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || || |||||||||| | |||||||| | || | ||||||||||| Sbjct 372142 TCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 372201 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| ||| |||||| || | ||| |||||| Sbjct 372202 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 372261 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||||||||| Sbjct 372262 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 372293 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 372310 AGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 372369 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || || |||||||||| | |||||||| | || | ||||||||||| Sbjct 372370 TCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 372429 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| ||| |||||| || | ||| |||||| Sbjct 372430 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 372489 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||||||||| Sbjct 372490 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 372521 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 372538 AGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 372597 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || || |||||||||| | |||||||| | || | ||||||||||| Sbjct 372598 TCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 372657 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| ||| |||||| || | ||| |||||| Sbjct 372658 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 372717 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||||||||| Sbjct 372718 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 372749 >seq1701 Length=366390 Score = 104 bits (114), Expect = 2e-17 Identities = 154/217 (71%), Gaps = 11/217 (5%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | |||| ||||||||| |||| ||||| || || || |||| Sbjct 285619 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGCTGTTGTAGTCTGAAAGAGTGTAGCCATC 285560 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || || || || || ||||| ||| ||| ||| | || | ||||||||||| Sbjct 285559 CTCCAGCTGTTTGCCCGCAAACATCAGACGTGGCTAGTCAGGTGGAATGCCCTCCTTGTC 285500 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || |||||| || | ||||| ||| ||| || ||| || | || | Sbjct 285499 TTGGAT------TTTGACTGACATTCTCGATGCTGTCACTGGGCTTGACCTCGAGGGAAA 285446 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| ||| | ||||||||||||||||| ||||| Sbjct 285445 TGGTCTTGCCCATCAGGGTCTTTACAAAGAT-TGCAT 285410 >seq9005 Length=82358 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/200 (72%), Gaps = 5/200 (3%) Strand=Plus/Plus Query 34780 GGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCC 34839 |||| ||| | ||| | ||| ||||| || || || | |||| ||||| || || || Sbjct 12352 GGTGGACTCTTCCTGGACGTTGTAGTCTGAAAGAGTGTGGCCATCCTCCAGCTGTTTGCC 12411 Query 34840 GGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTT 34899 || || ||||| | |||||||| || | ||||||||||| | | ||| || Sbjct 12412 CGCAAATATCAGATGCTGCTGGTCAGCTGGGATGCCCTCCTTGTCTTGGACTTTGGCGTT 12471 Query 34900 GACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 ||| || || || | ||| ||| |||||| |||| ||| |||||||| ||||| | | Sbjct 12472 GAC--ATTCTTGATGGTGTCACTGGGCTCGACCTCAA-GGTGATGGTCTTGCCCGTCAAG 12528 Query 34958 GTCTTTACAAAGATCTGCAT 34977 |||| |||||||||||||| Sbjct 12529 GTCTCCACAAAGATCTGCAT 12548 >seq5167 Length=254018 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||||||||| || | | || |||| ||||||||||| || || | Sbjct 220523 CTCCTTCTGAATGTTATAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAGA 220582 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||||| |||||| || | || | || ||||| || | || || || || Sbjct 220583 GATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATT 220642 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||| | || || || || |||| || |||||||| ||| | | ||| ||||| Sbjct 220643 TTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGGTCTTCCCCATAAAGGTTTTTAC 220702 Query 34966 AAAGATCTGCAT 34977 || |||||||| Sbjct 220703 GAAAATCTGCAT 220714 >seq633 Length=582679 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 34780 GGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCC 34839 |||| ||| ||||| ||||| ||||| || || |||| |||| ||||| ||||| || Sbjct 204121 GGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCC 204180 Query 34840 GGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTT 34899 || ||||| || | |||||||| | || | || || || || | || || || Sbjct 204181 TGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTT 204240 Query 34900 GACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || || || || | ||| ||| ||| || || | ||| |||||||| || || ||| Sbjct 204241 CAC--ATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGG 204298 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| || ||||||||||| Sbjct 204299 GTCTTCACGAAGATCTGCAT 204318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324980240539166