Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5167 109 4e-19 seq50868 95.1 9e-15 seq19457 95.1 9e-15 seq4376 87.8 1e-12 >seq5167 Length=254018 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 29577 CACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636 ||| | |||||| | || || || ||||||||||| || | | || || ||| || Sbjct 220505 CACAAGATGAAGATTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACGTCCATCTTC 220564 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 ||||| || |||||| | |||| |||||||||||| || ||||| || || || || || Sbjct 220565 CAGTTGCTTACCAGCAGAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 220624 Query 29697 TAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 | || || ||| |||||| || || | |||| || |||||||| || || || Sbjct 220625 GATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGGTCTT 220684 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | |||||||| || || |||||||| || Sbjct 220685 CCCCATAAAGGTTTTTACGAAAATCTGCATCTT 220717 >seq50868 Length=3469 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| || || || || ||||||||||| || | | || | ||| ||||| || Sbjct 2099 ATGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTG 2040 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 || |||||| | |||| |||||||||||| || ||||| || || || || || | || Sbjct 2039 CTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 1980 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| |||||| || || || |||| |||||||| ||||| | || | Sbjct 1979 AGCCTTTACATTTTCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCAT 1920 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 | |||||| | || |||||||| || Sbjct 1919 AAGGGTTTTTATGAAAATCTGCATCTT 1893 >seq19457 Length=14611 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| || || || || ||||||||||| || | | || | ||| ||||| || Sbjct 1948 ATGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTG 2007 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 || |||||| | |||| |||||||||||| || ||||| || || || || || | || Sbjct 2008 CTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 2067 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| |||||| || || || |||| |||||||| ||||| | || | Sbjct 2068 AGCCTTTACATTTTCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCAT 2127 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 | |||||| | || |||||||| || Sbjct 2128 AAGGGTTTTTATGAAAATCTGCATCTT 2154 >seq4376 Length=192284 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | | |||| || || | || |||||||||||||| || || | ||| Sbjct 63453 CAACACAAGAGGAAGAGTCGACTTCTTCTGAATGTTATAATCA--AA--GTACATCCATC 63508 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | ||| |||||||||||| || ||||| || || || || Sbjct 63509 TTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 63568 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| || ||| || || || |||| | |||||| | || || Sbjct 63569 CTGGATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGTTCAATGTCAAGAATGATGGT 63628 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| | || |||||||| || Sbjct 63629 CTTTCCCGTAAGGGTTTTTATGAAAATCTGCATCTT 63664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384376407081474