Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq5167 109 4e-19
seq50868 95.1 9e-15
seq19457 95.1 9e-15
seq4376 87.8 1e-12
>seq5167
Length=254018
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 29577 CACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636
||| | |||||| | || || || ||||||||||| || | | || || ||| ||
Sbjct 220505 CACAAGATGAAGATTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACGTCCATCTTC 220564
Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696
||||| || |||||| | |||| |||||||||||| || ||||| || || || || ||
Sbjct 220565 CAGTTGCTTACCAGCAGAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 220624
Query 29697 TAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756
| || || ||| |||||| || || | |||| || |||||||| || || ||
Sbjct 220625 GATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGGTCTT 220684
Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| | |||||||| || || |||||||| ||
Sbjct 220685 CCCCATAAAGGTTTTTACGAAAATCTGCATCTT 220717
>seq50868
Length=3469
Score = 95.1 bits (104), Expect = 9e-15
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642
|||||| || || || || ||||||||||| || | | || | ||| ||||| ||
Sbjct 2099 ATGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTG 2040
Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702
|| |||||| | |||| |||||||||||| || ||||| || || || || || | ||
Sbjct 2039 CTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 1980
Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762
|| ||| |||||| || || || |||| |||||||| ||||| | || |
Sbjct 1979 AGCCTTTACATTTTCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCAT 1920
Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789
| |||||| | || |||||||| ||
Sbjct 1919 AAGGGTTTTTATGAAAATCTGCATCTT 1893
>seq19457
Length=14611
Score = 95.1 bits (104), Expect = 9e-15
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642
|||||| || || || || ||||||||||| || | | || | ||| ||||| ||
Sbjct 1948 ATGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTG 2007
Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702
|| |||||| | |||| |||||||||||| || ||||| || || || || || | ||
Sbjct 2008 CTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 2067
Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762
|| ||| |||||| || || || |||| |||||||| ||||| | || |
Sbjct 2068 AGCCTTTACATTTTCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCAT 2127
Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789
| |||||| | || |||||||| ||
Sbjct 2128 AAGGGTTTTTATGAAAATCTGCATCTT 2154
>seq4376
Length=192284
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/216 (69%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | | |||| || || | || |||||||||||||| || || | |||
Sbjct 63453 CAACACAAGAGGAAGAGTCGACTTCTTCTGAATGTTATAATCA--AA--GTACATCCATC 63508
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | ||| |||||||||||| || ||||| || || || ||
Sbjct 63509 TTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 63568
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| || ||| || || || |||| | |||||| | || ||
Sbjct 63569 CTGGATCTTGGCCTTTACATTTCCTATTGTATCCGAGGGTTCAATGTCAAGAATGATGGT 63628
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || | |||||| | || |||||||| ||
Sbjct 63629 CTTTCCCGTAAGGGTTTTTATGAAAATCTGCATCTT 63664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 384376407081474
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |