Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq3226 93.3 4e-14 seq108 93.3 4e-14 seq2310 86.0 6e-12 >seq3226 Length=429548 Score = 93.3 bits (102), Expect = 4e-14 Identities = 127/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 |||||||| ||||| || | || |||||| | ||| | || ||| |||| ||||| ||| Sbjct 134077 TCTAGCATATGGGGACCAACATGTGATGGCCTCGATCGGATAGTTGAGCGCTGTGACCTG 134018 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || || | || |||||||||||| | | |||||||||||||| || |||| || | Sbjct 134017 CCCGAAATGCATGTGGGCGACTGGATGCTCTTTGAAAACATGGGTGCCTACA-CTGTTGC 133959 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 ||| |||| || || || || |||| | |||| | ||||||| || ||| Sbjct 133958 TGCTGCTTCTACTTTCAATGGATTCCAGAGGCCAACCATCTACTATGTGATGTCA 133904 >seq108 Length=1113236 Score = 93.3 bits (102), Expect = 4e-14 Identities = 202/297 (68%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||||| | | || || |||||||| ||| | ||| ||| | |||| | | || | Sbjct 779812 ATGCCTTTTATTTCATCGACCTTGGAGACATTCTAAAGAAACAACTAAGATTGTTAAAAG 779871 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| |||| | || || || || || | | | | ||| | | | Sbjct 779872 CTCTCCCTTGTCTCATGCTCTTCTATGCAGTCAAATGCAATGGTAGCAGAGCCA-TAGTG 779930 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 || |||||| ||||| | || || || ||||||||||| | ||| || || || || Sbjct 779931 AAAACCCTACCTGCCATCAAGACAGGATTTGACTGTGCTATCAAGACTGAAATACAATTG 779990 Query 20384 CTGCAAAAT-CTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCC 20442 |||| | | |||||| | | |||| ||||| | | ||| ||||||||||| || | Sbjct 779991 GTGCAGACTCCTGGGA-TGCCTCCAGAGAGGATTATCTATGCAAATCCTTGTAAACAACT 780049 Query 20443 TTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGA 20499 || || || | ||| ||||| | | |||||| | ||||||||||||||||||| Sbjct 780050 GTCTCAAATTAAGTAGGCCGCCAATAATGGAGTCCAGATGATGACTTTTGATAGTGA 780106 >seq2310 Length=307893 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 ||||||||||| | |||||| | | ||||| ||||| ||||| | | | | ||| Sbjct 103281 TTTATGTATTACATGAATGATAGAATATATGGATCATTTAATTGCATCCTTTATGATCAT 103340 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAAAGAAAAACGCCTTGAAGACAAAGACTATGTTTC- 21123 || | | | || | |||| ||| ||| || | |||| || | ||| ||| Sbjct 103341 GCACAGATAAAGTCTCTTCTGC--AAAAAAAGACCCAAACAAGATGAAAAGTATTATTCA 103398 Query 21124 --TAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 |||||| ||||| || | || |||||| | ||||| |||||| || | ||||| ||| Sbjct 103399 TTTAGCATATGGGGACCAACATGTGATGGCCTTGATTGGATTGTTGAGTGTTGTGACCTG 103458 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 || || | || ||||| || ||| | | |||||||| |||| ||||||| Sbjct 103459 CCCGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAATGTGGGTGCTTACA 103510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462505438439520