Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_024303.1
Length=144898
Score E
Sequences producing significant alignments: (Bits) Value
seq3226 93.3 4e-14
seq108 93.3 4e-14
seq2310 86.0 6e-12
>seq3226
Length=429548
Score = 93.3 bits (102), Expect = 4e-14
Identities = 127/175 (73%), Gaps = 2/175 (1%)
Strand=Plus/Minus
Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181
|||||||| ||||| || | || |||||| | ||| | || ||| |||| ||||| |||
Sbjct 134077 TCTAGCATATGGGGACCAACATGTGATGGCCTCGATCGGATAGTTGAGCGCTGTGACCTG 134018
Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241
|| || | || |||||||||||| | | |||||||||||||| || |||| || |
Sbjct 134017 CCCGAAATGCATGTGGGCGACTGGATGCTCTTTGAAAACATGGGTGCCTACA-CTGTTGC 133959
Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295
||| |||| || || || || |||| | |||| | ||||||| || |||
Sbjct 133958 TGCTGCTTCTACTTTCAATGGATTCCAGAGGCCAACCATCTACTATGTGATGTCA 133904
>seq108
Length=1113236
Score = 93.3 bits (102), Expect = 4e-14
Identities = 202/297 (68%), Gaps = 4/297 (1%)
Strand=Plus/Plus
Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264
||||||||| | | || || |||||||| ||| | ||| ||| | |||| | | || |
Sbjct 779812 ATGCCTTTTATTTCATCGACCTTGGAGACATTCTAAAGAAACAACTAAGATTGTTAAAAG 779871
Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323
|| | ||| |||| | || || || || || | | | | ||| | | |
Sbjct 779872 CTCTCCCTTGTCTCATGCTCTTCTATGCAGTCAAATGCAATGGTAGCAGAGCCA-TAGTG 779930
Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383
|| |||||| ||||| | || || || ||||||||||| | ||| || || || ||
Sbjct 779931 AAAACCCTACCTGCCATCAAGACAGGATTTGACTGTGCTATCAAGACTGAAATACAATTG 779990
Query 20384 CTGCAAAAT-CTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCC 20442
|||| | | |||||| | | |||| ||||| | | ||| ||||||||||| || |
Sbjct 779991 GTGCAGACTCCTGGGA-TGCCTCCAGAGAGGATTATCTATGCAAATCCTTGTAAACAACT 780049
Query 20443 TTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGA 20499
|| || || | ||| ||||| | | |||||| | |||||||||||||||||||
Sbjct 780050 GTCTCAAATTAAGTAGGCCGCCAATAATGGAGTCCAGATGATGACTTTTGATAGTGA 780106
>seq2310
Length=307893
Score = 86.0 bits (94), Expect = 6e-12
Identities = 159/232 (69%), Gaps = 5/232 (2%)
Strand=Plus/Plus
Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064
||||||||||| | |||||| | | ||||| ||||| ||||| | | | | |||
Sbjct 103281 TTTATGTATTACATGAATGATAGAATATATGGATCATTTAATTGCATCCTTTATGATCAT 103340
Query 21065 GCTCGTCCTATGCCTATGCTGCTTAAAGAAAAACGCCTTGAAGACAAAGACTATGTTTC- 21123
|| | | | || | |||| ||| ||| || | |||| || | ||| |||
Sbjct 103341 GCACAGATAAAGTCTCTTCTGC--AAAAAAAGACCCAAACAAGATGAAAAGTATTATTCA 103398
Query 21124 --TAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181
|||||| ||||| || | || |||||| | ||||| |||||| || | ||||| |||
Sbjct 103399 TTTAGCATATGGGGACCAACATGTGATGGCCTTGATTGGATTGTTGAGTGTTGTGACCTG 103458
Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233
|| || | || ||||| || ||| | | |||||||| |||| |||||||
Sbjct 103459 CCCGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAATGTGGGTGCTTACA 103510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462505438439520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |