Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq1519 91.5 1e-13 >seq1519 Length=392406 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/244 (69%), Gaps = 23/244 (9%) Strand=Plus/Plus Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCA 1130 ||||||| |||||||| |||| ||| |||||| || || || | | | |||||||| Sbjct 139580 CCACAGCCCTAGCTTCCAATCTGGAAA-GAGTAG-TTGCTTCTGGGGGCAATGGAAGGCA 139637 Query 1131 TTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAA--- 1187 |||||||| || || || ||||| |||||| ||||||||||||| || |||| || Sbjct 139638 TTTTAAAGGAATGGTTTGGAAAAGAAATCTCCAGGGCACTTACATAGTCGTCCAAAAGCT 139697 Query 1188 GTTTTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTGTATGTCCCGTGGTAGT- 1246 | || || || | |||||| ||| ||||| | |||| || | |||| || Sbjct 139698 GCTTAGACAAAG---ACTGTAATTCCACGATTA---TTTTCTGTACTTCACTTGGTTGTA 139751 Query 1247 ------GGATGGCCG-----TGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACA 1295 | |||| | |||||||| | | ||| ||| |||||||||||||||| Sbjct 139752 ATGGAGGAATGGGTGACAAATGGGAGGACAACCAGGTTCCCATGCAGCAGAGCAGGAACA 139811 Query 1296 GGGC 1299 |||| Sbjct 139812 GGGC 139815 Score = 89.7 bits (98), Expect = 5e-13 Identities = 202/296 (68%), Gaps = 31/296 (10%) Strand=Plus/Plus Query 1467 AGGACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGG 1526 |||||| | | |||||| | | || | || || |||||||| ||||| |||||||| Sbjct 139977 AGGACCCA--GGTACCTGCGTGAGAGCCCATGGCGAGAGAGAGCAAGGCC--CGCTTTGG 140032 Query 1527 CAACAGCTGCTAGAGTGAGATGTGCTCGCTATA-CTTTTAGGGAACTGTATATAAAGGGC 1585 |||||||| || ||| ||||||| | || ||| | || | ||||||||| ||| Sbjct 140033 CAACAGCTTCTGGAGCCAGATGTGTTTGCGATAGCCGCCAGAG----GTATATAAA-GGC 140087 Query 1586 TAGTTGTAAGGAGGAGCAC--TAAAAGTACCGCCCACGGTAAAGTCATTACTCAG----- 1638 ||| | | || || || | | || ||||||| || |||| |||| ||||| Sbjct 140088 CAGTGCGAGGAAGAAGAACCATCAGTGTCCCGCCCATGGCAAAG-CATTGCTCAGCTTTT 140146 Query 1639 ------AAAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGG 1691 |||||| |||||| || ||||| | ||| | | |||| |||| ||||| Sbjct 140147 CTCCACAAAACACTTTCAAGATTCTGCCA---AAGTCTGGGTGAGAGCAGGGCTGGAAGG 140203 Query 1692 AAA---TGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACAC 1744 ||| ||| |||||||| ||| ||||||| |||||| || || | | ||||| Sbjct 140204 AAACGTTGAGGTTACCCTCAAGGCAGGCAGATACTTGACTCAGTGAAGACGCACAC 140259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 437575904252000