Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq5167 154 3e-32
seq1029 154 3e-32
seq50868 136 8e-27
seq19457 136 8e-27
seq4376 125 1e-23
seq3745 125 1e-23
seq1192 125 1e-23
seq1968 113 9e-20
seq3318 98.7 2e-15
seq2667 98.7 2e-15
seq1774 86.0 1e-11
seq2780 84.2 4e-11
>seq5167
Length=254018
Score = 154 bits (170), Expect = 3e-32
Identities = 156/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||| | || || ||||| || ||||| ||||| | | | | || ||||| |||||
Sbjct 220512 TGAAGATTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 220571
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||| |||| |||||||| ||||| ||||| |||||||||||||| || |||||
Sbjct 220572 TTACCAGCAGAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 220631
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||||| || ||||| ||||| || || | ||| || ||||| || |
Sbjct 220632 GCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGGTCTTCCCCATA 220691
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
|| || ||||| || ||||||||
Sbjct 220692 AAGGTTTTTACGAAAATCTGCAT 220714
>seq1029
Length=469353
Score = 154 bits (170), Expect = 3e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| || ||||| ||||| || ||||||||||| || |||||||| || || || |||||
Sbjct 371610 ACCACCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGA 371669
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | || ||||| || ||||| ||||||||||| | || || || || || ||
Sbjct 371670 CAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGG 371729
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
|| || ||||| ||||| ||||| || || || || ||||| || ||| | || || ||
Sbjct 371730 GATCCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGAC 371789
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| |||| ||||| || || ||||||||
Sbjct 371790 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 371837
>seq50868
Length=3469
Score = 136 bits (150), Expect = 8e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| || || ||||| || ||||| ||||| | | | | || ||||| || ||
Sbjct 2098 TGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTGC 2039
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||||||||||| |||||||| ||||| ||||| |||||||||||||| || |||||
Sbjct 2038 TTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTA 1979
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||||| || ||||| ||||| || | ||| || ||| | || |
Sbjct 1978 GCCTTTACATTTTCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCATA 1919
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| || |||| || ||||||||
Sbjct 1918 AGGGTTTTTATGAAAATCTGCAT 1896
>seq19457
Length=14611
Score = 136 bits (150), Expect = 8e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| || || ||||| || ||||| ||||| | | | | || ||||| || ||
Sbjct 1949 TGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTGC 2008
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||||||||||| |||||||| ||||| ||||| |||||||||||||| || |||||
Sbjct 2009 TTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTA 2068
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||||| || ||||| ||||| || | ||| || ||| | || |
Sbjct 2069 GCCTTTACATTTTCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCATA 2128
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| || |||| || ||||||||
Sbjct 2129 AGGGTTTTTATGAAAATCTGCAT 2151
>seq4376
Length=192284
Score = 125 bits (138), Expect = 1e-23
Identities = 148/200 (74%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670
||||| || | ||||| || ||||||||| | || || ||||| ||||| ||
Sbjct 63466 AGAGTCGACTTCTTCTGAATGTTATAATCAAAGTACAT----CCATCTTCCAGTTGCTTG 63521
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
||||||||| | |||||||| ||||| ||||| |||||||||||||| || ||||| ||
Sbjct 63522 CCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC 63581
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
||||||||| | || ||||| ||||| | || | | | || ||||| || || |
Sbjct 63582 TTTACATTTCCTATTGTATCCGAGGGTTCAATGTCAAGAATGATGGTCTTTCCCGTAAGG 63641
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| |||| || ||||||||
Sbjct 63642 GTTTTTATGAAAATCTGCAT 63661
>seq3745
Length=218430
Score = 125 bits (138), Expect = 1e-23
Identities = 152/204 (75%), Gaps = 5/204 (2%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA-CCGTCTTCTAGTTG 82666
|| ||||| || || ||||| || || || ||||| | |||| || || ||||| |||||
Sbjct 138517 TGAAGAGTGGACTCCTTCTGAATGTTGTATTCAGACA-AATTATATCCATCTTCCAGTTG 138459
Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726
|| |||||||||| | | || ||||| ||| | |||||||||||||| || |||||
Sbjct 138458 CTTGCCAGCAAAGACAA---TCTGCTGATCAGGAAGAATTCCTTCCTTATCCTGGATCTT 138402
Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
|| ||||||||||| || |||| | |||| || || ||||| || ||||| || |
Sbjct 138401 GGCCTTTACATTTTCTATTGTATTAGAGGGTTTAACCTCAAAAGTGATGGTCTTCCCCTT 138342
Query 82787 CAACGTCTTTACAAATATCTGCAT 82810
|| |||||||| |||||||
Sbjct 138341 AAAGAGTTTTACAAAAGTCTGCAT 138318
>seq1192
Length=438698
Score = 125 bits (138), Expect = 1e-23
Identities = 150/201 (75%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670
||||| || || ||||| || |||| || | | | | | | || ||||| ||||| ||
Sbjct 85785 AGAGTTGACTCCTTCTGAATGTTATGATGAAACAAAGTACGTCCATCTTCCAGTTGCTTA 85844
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
||||||||||| |||||||| ||||| ||||| |||||||||||||| || |||| ||
Sbjct 85845 CCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGGTCTTGGCC 85904
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
||||| ||||| | ||||| ||||| || || | ||| || ||||| || | ||
Sbjct 85905 TTTACGTTTTCTGTTGTATCTGAGGGTTCAACCTCAAGAGTGATGGTCTTCCCCAT-AAG 85963
Query 82791 GTCT-TTACAAATATCTGCAT 82810
|| | ||| || ||||||||
Sbjct 85964 GTTTCTTAGGAAAATCTGCAT 85984
>seq1968
Length=337473
Score = 113 bits (124), Expect = 9e-20
Identities = 134/179 (75%), Gaps = 2/179 (1%)
Strand=Plus/Plus
Query 82633 TATAATCAGATAGAAT-TCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGT 82691
|||| ||||| | ||| | ||| | ||| ||||| || ||||||||||||| ||||||
Sbjct 164857 TATAGTCAGACAAAATATGTACATT-TTCCAGTTGGTTGCCAGCAAAGATTACTCTTTGC 164915
Query 82692 TGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751
||||| ||||| |||||||||||||| || ||||| || ||||||||||| | ||| |
Sbjct 164916 TGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTACCT 164975
Query 82752 TTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| |||| | || || ||||| | | | || |||| || ||||||||
Sbjct 164976 GAGGGTTCAGCTTCTAGAGCCATGGTCTTCCTCATAAGGGTTTTTATGAAAATCTGCAT 165034
>seq3318
Length=240609
Score = 98.7 bits (108), Expect = 2e-15
Identities = 114/153 (75%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717
||||||||| || ||||||||| | ||||| | ||||| ||||| |||||||||||||
Sbjct 20451 TTCTAGTTGCTTGCCAGCAAAGGTCAGTCT--GCTGATCAGGAGGAATTCCTTCCTTATG 20508
Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777
||||||| || ||| || |||| || ||||| ||||| || | | ||| || |
Sbjct 20509 CTGAATCTCGGCCTTTCCAATTTCTATTGTATCCAGGGGTTCAACCTAGAGAGTGATGAT 20568
Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||| || | | || |||| ||| ||||||||
Sbjct 20569 CTTCCCCTTAAGGGTTTTTAGAAAAATCTGCAT 20601
>seq2667
Length=281100
Score = 98.7 bits (108), Expect = 2e-15
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214
|||||||||| | |||||||||| | || || || || || |||||||| || || ||
Sbjct 149845 TGGTGGTACTTTGTATCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATCCTAAGA 149904
Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274
|| ||| || || ||| ||| | || ||||||||||| | ||| |||||||| ||
Sbjct 149905 AAGAAGAACAACCAAGTTTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACATTG 149964
Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311
| ||| | || ||||| ||| |||| || || ||||
Sbjct 149965 TGGTGGATTGGTATTAAGTGGGTTGCAGGGGGACAAG 150001
>seq1774
Length=358375
Score = 86.0 bits (94), Expect = 1e-11
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682
||||| || ||||||||||| | | | | || ||||| ||||| || |||||||||||
Sbjct 323354 TTCTGAATGTTATAATCAGACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATC 323295
Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCT 82709
|||||||| ||||| ||||| ||||||
Sbjct 323294 AGTCTTTGCTGATCAGGAGGAATTCCT 323268
>seq2780
Length=272428
Score = 84.2 bits (92), Expect = 4e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670
||||| | || || || || || | ||||| ||| | || |||| ||||||||
Sbjct 240622 AGAGTGGTCTCCTTTTGAATTTTGCAGTCAGACAGAGTGTGTCCATCTTGGAGTTGTTTG 240563
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
||||||||| | |||||||| ||||| ||||| ||| ||| | || |||||||| |
Sbjct 240562 CCAGCAAAGCTCAGTCTTTGCTGATCAGGAGGAATTTCTTTTTCATTCTGAATCTTGTCC 240503
Query 82731 TTTACATTTTC 82741
|||||||||||
Sbjct 240502 TTTACATTTTC 240492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 979568974735246
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |