Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5167 154 3e-32 seq1029 154 3e-32 seq50868 136 8e-27 seq19457 136 8e-27 seq4376 125 1e-23 seq3745 125 1e-23 seq1192 125 1e-23 seq1968 113 9e-20 seq3318 98.7 2e-15 seq2667 98.7 2e-15 seq1774 86.0 1e-11 seq2780 84.2 4e-11 >seq5167 Length=254018 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||| | || || ||||| || ||||| ||||| | | | | || ||||| ||||| Sbjct 220512 TGAAGATTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 220571 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||| |||| |||||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 220572 TTACCAGCAGAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 220631 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || ||||| ||||| || || | ||| || ||||| || | Sbjct 220632 GCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGGTCTTCCCCATA 220691 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || || ||||| || |||||||| Sbjct 220692 AAGGTTTTTACGAAAATCTGCAT 220714 >seq1029 Length=469353 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || ||||| ||||| || ||||||||||| || |||||||| || || || ||||| Sbjct 371610 ACCACCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGA 371669 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || ||||| ||||||||||| | || || || || || || Sbjct 371670 CAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGG 371729 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| ||||| ||||| || || || || ||||| || ||| | || || || Sbjct 371730 GATCCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGAC 371789 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| ||||| || || |||||||| Sbjct 371790 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 371837 >seq50868 Length=3469 Score = 136 bits (150), Expect = 8e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || ||||| || ||||| ||||| | | | | || ||||| || || Sbjct 2098 TGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTGC 2039 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 2038 TTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTA 1979 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || ||||| ||||| || | ||| || ||| | || | Sbjct 1978 GCCTTTACATTTTCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCATA 1919 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || |||| || |||||||| Sbjct 1918 AGGGTTTTTATGAAAATCTGCAT 1896 >seq19457 Length=14611 Score = 136 bits (150), Expect = 8e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || ||||| || ||||| ||||| | | | | || ||||| || || Sbjct 1949 TGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACATCCATCTTCGAGGTGC 2008 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 2009 TTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTA 2068 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || ||||| ||||| || | ||| || ||| | || | Sbjct 2069 GCCTTTACATTTTCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCCCATA 2128 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || |||| || |||||||| Sbjct 2129 AGGGTTTTTATGAAAATCTGCAT 2151 >seq4376 Length=192284 Score = 125 bits (138), Expect = 1e-23 Identities = 148/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||||| || | ||||| || ||||||||| | || || ||||| ||||| || Sbjct 63466 AGAGTCGACTTCTTCTGAATGTTATAATCAAAGTACAT----CCATCTTCCAGTTGCTTG 63521 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||| | |||||||| ||||| ||||| |||||||||||||| || ||||| || Sbjct 63522 CCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC 63581 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||| | || ||||| ||||| | || | | | || ||||| || || | Sbjct 63582 TTTACATTTCCTATTGTATCCGAGGGTTCAATGTCAAGAATGATGGTCTTTCCCGTAAGG 63641 Query 82791 GTCTTTACAAATATCTGCAT 82810 || |||| || |||||||| Sbjct 63642 GTTTTTATGAAAATCTGCAT 63661 >seq3745 Length=218430 Score = 125 bits (138), Expect = 1e-23 Identities = 152/204 (75%), Gaps = 5/204 (2%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA-CCGTCTTCTAGTTG 82666 || ||||| || || ||||| || || || ||||| | |||| || || ||||| ||||| Sbjct 138517 TGAAGAGTGGACTCCTTCTGAATGTTGTATTCAGACA-AATTATATCCATCTTCCAGTTG 138459 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || |||||||||| | | || ||||| ||| | |||||||||||||| || ||||| Sbjct 138458 CTTGCCAGCAAAGACAA---TCTGCTGATCAGGAAGAATTCCTTCCTTATCCTGGATCTT 138402 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || ||||||||||| || |||| | |||| || || ||||| || ||||| || | Sbjct 138401 GGCCTTTACATTTTCTATTGTATTAGAGGGTTTAACCTCAAAAGTGATGGTCTTCCCCTT 138342 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 || |||||||| ||||||| Sbjct 138341 AAAGAGTTTTACAAAAGTCTGCAT 138318 >seq1192 Length=438698 Score = 125 bits (138), Expect = 1e-23 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||||| || || ||||| || |||| || | | | | | | || ||||| ||||| || Sbjct 85785 AGAGTTGACTCCTTCTGAATGTTATGATGAAACAAAGTACGTCCATCTTCCAGTTGCTTA 85844 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||||||| ||||| ||||| |||||||||||||| || |||| || Sbjct 85845 CCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGGTCTTGGCC 85904 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||| ||||| | ||||| ||||| || || | ||| || ||||| || | || Sbjct 85905 TTTACGTTTTCTGTTGTATCTGAGGGTTCAACCTCAAGAGTGATGGTCTTCCCCAT-AAG 85963 Query 82791 GTCT-TTACAAATATCTGCAT 82810 || | ||| || |||||||| Sbjct 85964 GTTTCTTAGGAAAATCTGCAT 85984 >seq1968 Length=337473 Score = 113 bits (124), Expect = 9e-20 Identities = 134/179 (75%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 82633 TATAATCAGATAGAAT-TCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGT 82691 |||| ||||| | ||| | ||| | ||| ||||| || ||||||||||||| |||||| Sbjct 164857 TATAGTCAGACAAAATATGTACATT-TTCCAGTTGGTTGCCAGCAAAGATTACTCTTTGC 164915 Query 82692 TGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 ||||| ||||| |||||||||||||| || ||||| || ||||||||||| | ||| | Sbjct 164916 TGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTACCT 164975 Query 82752 TTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| |||| | || || ||||| | | | || |||| || |||||||| Sbjct 164976 GAGGGTTCAGCTTCTAGAGCCATGGTCTTCCTCATAAGGGTTTTTATGAAAATCTGCAT 165034 >seq3318 Length=240609 Score = 98.7 bits (108), Expect = 2e-15 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||||||||| || ||||||||| | ||||| | ||||| ||||| ||||||||||||| Sbjct 20451 TTCTAGTTGCTTGCCAGCAAAGGTCAGTCT--GCTGATCAGGAGGAATTCCTTCCTTATG 20508 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 ||||||| || ||| || |||| || ||||| ||||| || | | ||| || | Sbjct 20509 CTGAATCTCGGCCTTTCCAATTTCTATTGTATCCAGGGGTTCAACCTAGAGAGTGATGAT 20568 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || | | || |||| ||| |||||||| Sbjct 20569 CTTCCCCTTAAGGGTTTTTAGAAAAATCTGCAT 20601 >seq2667 Length=281100 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| | |||||||||| | || || || || || |||||||| || || || Sbjct 149845 TGGTGGTACTTTGTATCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATCCTAAGA 149904 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || ||| || || ||| ||| | || ||||||||||| | ||| |||||||| || Sbjct 149905 AAGAAGAACAACCAAGTTTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACATTG 149964 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 | ||| | || ||||| ||| |||| || || |||| Sbjct 149965 TGGTGGATTGGTATTAAGTGGGTTGCAGGGGGACAAG 150001 >seq1774 Length=358375 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| || ||||||||||| | | | | || ||||| ||||| || ||||||||||| Sbjct 323354 TTCTGAATGTTATAATCAGACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATC 323295 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCT 82709 |||||||| ||||| ||||| |||||| Sbjct 323294 AGTCTTTGCTGATCAGGAGGAATTCCT 323268 >seq2780 Length=272428 Score = 84.2 bits (92), Expect = 4e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||||| | || || || || || | ||||| ||| | || |||| |||||||| Sbjct 240622 AGAGTGGTCTCCTTTTGAATTTTGCAGTCAGACAGAGTGTGTCCATCTTGGAGTTGTTTG 240563 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||| | |||||||| ||||| ||||| ||| ||| | || |||||||| | Sbjct 240562 CCAGCAAAGCTCAGTCTTTGCTGATCAGGAGGAATTTCTTTTTCATTCTGAATCTTGTCC 240503 Query 82731 TTTACATTTTC 82741 ||||||||||| Sbjct 240502 TTTACATTTTC 240492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979568974735246