Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq964 221 1e-52 seq4934 217 2e-51 >seq964 Length=529263 Score = 221 bits (244), Expect = 1e-52 Identities = 242/322 (75%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | || || || || || || ||||| ||||| || || Sbjct 295630 CATAGAGAGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGTGAC 295571 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| ||||||||||||||| || | || || || || Sbjct 295570 ACATGTAACACCCTTCATCCTCCAAGGTGGTGTTCCAAAAGGTGATGGTTGAGTTCTGGA 295511 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | |||||| || | ||||||||| ||||| || || | Sbjct 295510 GTCCCAGCTGAGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACCACAACCCCATGGT 295451 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| |||||||||| ||||| | |||||| | |||||||| || || | Sbjct 295450 TCTTGCTGAAGGTGACCATGTTTTCTGGGCTTGCAGCCTTCTTTTTCTGCCATGTCACAA 295391 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| | ||||| ||||| |||||||| |||||||||||||||| | Sbjct 295390 TCAAGACTTCCTGAGAAGTTTGCAGAGAACATCTTAAGGAAGCAGGTGTGTTCAGCTGCT 295331 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||||| || || || ||||| Sbjct 295330 CTCTTTCATCCTGGGTCACCAC 295309 >seq4934 Length=300703 Score = 217 bits (240), Expect = 2e-51 Identities = 611/932 (66%), Gaps = 17/932 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| ||||| | ||| ||| Sbjct 80227 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCGAAGAGGTCGACGTCCA 80168 Query 162119 CATCGAACTTGTTCGCGAACA---GGTGATGCGAGTTCTTCAATATCCAATTAAGATCCC 162175 | || ||||| || || |||| ||||||| | | || ||||| || | || | Sbjct 80167 CGTCAAACTTATTGGCAAACAAGTGGTGATG-GCG-----CAGCATCCAGTTTAAGTCGC 80114 Query 162176 CCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCC 162235 | | ||| || || ||||| || |||||||| || || |||| || || || | || | Sbjct 80113 CAGCTCCAAAGACACACACTGAGCGCACGTGGACCCCATTGCAGGGTGGGTAGGGAGCAC 80054 Query 162236 CATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGT 162295 | | | ||||||||||| |||| |||||||| || ||||||| | |||||||||| Sbjct 80053 CCTTGGAAACATCCCCCTCAAAGTACTGCCACTTGACAAACCTAGCAACCGCCTGCATGT 79994 Query 162296 CGGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTA 162355 | || |||||| || | | | | | | || || || | || | || || | Sbjct 79993 CAGACAAGTCGTATTTATGGCTTAAGGAGAGTGAGCCCGGGACTTCGGGGATCCTTTGGA 79934 Query 162356 GAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCC 162415 |||||||| || | ||| ||||| || || || || | | ||||||||| |||| Sbjct 79933 TGGTAGCCCAGAGATATTCATCTGGGCTGTAAGTATCTTGTGCCCACTCCATAAACTTTT 79874 Query 162416 TGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGC 162475 || ||| || | ||| | || || || ||| | || | ||| || || | Sbjct 79873 GGATTTTTTCATTCTCTAGCACATACCCCACATATTCCCTACTGACCACAAAATAGGCAC 79814 Query 162476 TACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTA 162535 | || ||||| | ||| | | || || ||| |||| |||||||||| | Sbjct 79813 TGCCTGAAAAAAGAGGTGTTTCAAGTGGGGGATGCTTTTTGATAGTCCCCGTGTTGATCA 79754 Query 162536 CCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGT 162595 | |||| | |||| || | || ||||||| | ||| ||| | | | Sbjct 79753 GCTTTCCATTAACGATTACAAAACGTTTTTTCCACCTTTCTTCTTTATTGGATGGCATCT 79694 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 ||||| || || |||| |||| || | ||| |||| | || || |||| | Sbjct 79693 TCTCGGTTTCGAGGTTGTTTTCACCCATGAATGACTTGAGCTTTCTGACAATTTCTAAGT 79634 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCA--CTTAACGCT 162713 |||| |||| ||||| || | || || ||||| || | |||||||| || || | Sbjct 79633 TGGTTTTAATAGGAAAATCCATACCACAAAGATTTATCAAGTATTTCCAGGCTGTACTC- 79575 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 | |||||| || |||| | ||||| || || |||||||| | || ||| || || || Sbjct 79574 -ATTCCGTAGAGGTCCTTCATGCAGTTGAGGTCCGCCTGGACCCTACCCCAGGATGCATA 79516 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 | || ||||||||| | |||| |||||||| || |||||| || | || ||||| Sbjct 79515 AATCACACTCTCCAACTGACTGGCCACAAAGACGTTACTGAAACAGGACGCAATGCCCAT 79456 Query 162834 CACGGCCAGTGAGAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 ||| || | | || ||| || | ||| | || ||||| | ||| || | |||| Sbjct 79455 CACCGCAGCTAAAAAGGAATCC--TCTGATTTTTTGTCCACGTGAATGCAATAGAAATTC 79398 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| || ||||||||||| | || || | ||| || || || || || ||||| Sbjct 79397 TGAGGCATATAAATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACT 79338 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || ||||| || || || ||||| ||||| || Sbjct 79337 ATGGAATATGCAATTGGAAACTCCGCCTCTTC 79306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577134041974400