Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3745 111 4e-19 seq5167 105 2e-17 seq4376 104 6e-17 seq1192 95.1 3e-14 seq633 93.3 1e-13 >seq3745 Length=218430 Score = 111 bits (122), Expect = 4e-19 Identities = 155/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 206179 TTTTGCAAAACGCTCACAGGAAAA-ACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||||| || ||| || || |||||||| || || || ||| | ||| | Sbjct 138326 TTTTGTAAAACTCTTTAAGGGGAAGACCATCACTTTTGAGGTTAAACCCTCTAATACAAT 138385 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGAC 206296 ||| |||||| ||||| || || || ||||||||| | || || ||| ||| Sbjct 138386 AGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTGA---TCAGCAGA- 138441 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 || |||| || || ||||| ||||||||||| | |||| | || |||||| | |||| Sbjct 138442 TTGTCTTTGCTGGCAAGCAACTGGAAGATGGATATAATTTGTCTGAATACAACATTCAGA 138501 Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 206389 | ||||| |||||||| ||||| |||||||||| Sbjct 138502 AGGAGTCCACTCTTCATCTTGTGTTGAGACTTC 138534 >seq5167 Length=254018 Score = 105 bits (116), Expect = 2e-17 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAG 206256 || || || |||||| | || || ||| | || ||| | ||| |||||| ||| Sbjct 220687 GGGAAGACCATCACTCTTGAGGTTGAACCCTTGGATACAATAGAAAATGTAAAGGCCAAG 220628 Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316 || || || || ||||||||| || || |||||||| |||| || || ||||| Sbjct 220627 ATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTCTGCTGGTAAGCAA 220568 Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTT 206376 ||||||||||| | |||||| | || || ||| | ||||| ||||| | |||||| ||| Sbjct 220567 CTGGAAGATGGACGTACTTTGTCTGACTATAACATTCAGAAGGAGTCAAATCTTCATCTT 220508 Query 206377 GTTTTGAGACTTC 206389 || || ||||||| Sbjct 220507 GTGTTTAGACTTC 220495 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 ||||||| || ||||| |||||| | ||||| ||||| | |||||||||| |||||| | Sbjct 220495 GAAGTCTAAACACAAGATGAAGATTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTAC 220554 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||| ||||| || || |||| || | ||| ||| Sbjct 220555 GTCCATCTTCCAGTTGCTTACCAGCAGAGATCAGTCTTTGCTGA 220598 >seq4376 Length=192284 Score = 104 bits (114), Expect = 6e-17 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || |||| | | || | ||| || || ||| | | | Sbjct 63646 AAAACCCTTACGGGAAAGACCATCATTCTTGACATTGAACCCTCGGATACAATAGGAAAT 63587 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || |||||||| | ||| Sbjct 63586 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGACCTTT 63527 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | ||||| ||||| ||| | ||||| |||| Sbjct 63526 GCTGGCAAGCAACTGGAAGATGGATGTACTTT----GATTATAACATTCAGAAGAAGTCG 63471 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 ||||||| ||||| |||||||||| Sbjct 63470 ACTCTTCCTCTTGTGTTGAGACTTC 63446 >seq1192 Length=438698 Score = 95.1 bits (104), Expect = 3e-14 Identities = 137/193 (71%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAG 206256 || || || |||||| | || || ||| || || ||| ||| |||||| ||| Sbjct 85957 GGGAAGACCATCACTCTTGAGGTTGAACCCTCAGATACAACAGAAAACGTAAAGGCCAAG 85898 Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316 | || || || ||||||||| || || |||||||| ||||| || || ||||| Sbjct 85897 ACCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGTAAGCAA 85838 Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTT 206376 ||||||||||| | |||||| || | ||| | ||||| ||||| |||||| ||| Sbjct 85837 CTGGAAGATGGACGTACTTTGTTTCATCATAACATTCAGAAGGAGTCAACTCTT---CTT 85781 Query 206377 GTTTTGAGACTTC 206389 || |||||||||| Sbjct 85780 GTGTTGAGACTTC 85768 >seq633 Length=582679 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||||||||| |||||| |||| Sbjct 204531 AAGACTCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAGAAT 204472 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||| || || ||| || || || ||||| Sbjct 204471 GTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCAGCAGAGGCTCATCTTT 204412 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 204411 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCC 204352 Query 206365 ACTCTTCACCTTGT 206378 || | ||||| || Sbjct 204351 ACCTTGCACCTGGT 204338 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||||||||| |||||| |||| Sbjct 204303 AAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAGAAT 204244 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||| || || ||| || || || ||||| Sbjct 204243 GTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCAGCAGAGGCTCATCTTT 204184 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | || |||||| ||||||||||||| Sbjct 204183 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCC 204124 Query 206365 AC 206366 || Sbjct 204123 AC 204122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179102584830394