Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq163782 109 2e-20 seq163734 105 2e-19 seq11438 98.7 3e-17 seq1877 98.7 3e-17 seq1029 98.7 3e-17 seq43 98.7 3e-17 seq3263 96.9 1e-16 seq368 91.5 5e-15 seq7636 89.7 2e-14 seq1577 89.7 2e-14 >seq163782 Length=535 Score = 109 bits (120), Expect = 2e-20 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 415 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 474 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 475 CCCGGGTTTCGGC 487 >seq163734 Length=535 Score = 105 bits (116), Expect = 2e-19 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 415 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 474 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 475 CCCGGGTTTCGGC 487 >seq11438 Length=51889 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2371 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2430 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2431 CCGGGTTTCGGC 2442 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 10271 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 10330 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 10331 CCGGGTTTCGGC 10342 >seq1877 Length=344973 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 274030 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 273971 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 273970 CCGGGTTTCGGC 273959 >seq1029 Length=469353 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 382563 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 382504 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 382503 CCGGGTTTCGGC 382492 >seq43 Length=1405944 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1200358 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1200299 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1200298 CCGGGTTTCGGC 1200287 >seq3263 Length=243028 Score = 96.9 bits (106), Expect = 1e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| Sbjct 117686 AAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGG 117745 Query 2833 GCTTCAGC 2840 | ||| || Sbjct 117746 GTTTCGGC 117753 >seq368 Length=708523 Score = 91.5 bits (100), Expect = 5e-15 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| || |||||||| ||||||||| |||||||||||||||||||||||||||||| | Sbjct 470797 GGCCGAGATAGCTCAGGTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 470856 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 470857 CCCGGGTTTCGGC 470869 >seq7636 Length=105097 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||| | Sbjct 43913 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACCAAAGATCTACAGGTCACTGGTTCAGTC 43854 Query 2829 CCGGGCTTCAGC 2840 | ||| |||||| Sbjct 43853 CAGGGTTTCAGC 43842 >seq1577 Length=384610 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||| |||||||||||||||||| |||||||||| |||||||||||||||| || | | Sbjct 297564 GCTGAGATAGCTCAGTTGGGAGAGCGTTAGACTGAAAATCTAAAGGTCCCTGGCTCCATC 297623 Query 2829 CCGGGCTTCAGC 2840 || || |||||| Sbjct 297624 CCAGGTTTCAGC 297635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15818480350530