Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1029 98.7 9e-16 seq633 98.7 9e-16 seq9005 82.4 7e-11 >seq1029 Length=469353 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||||||||| || | || ||| || | || |||||||| || || ||||| Sbjct 371646 CTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAA 371705 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | || | | ||||||||| |||||| ||| | | Sbjct 371706 GATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 371765 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || ||||| Sbjct 371766 CTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 371825 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 371826 GAAGATCTGCAT 371837 >seq633 Length=582679 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || || || ||| || || ||||||||||| | | || || | || || Sbjct 204337 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 204396 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || ||||| || | || ||||||||| | || | || || || ||| Sbjct 204397 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTG 204456 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | | ||||| || | ||||| |||| ||||| || || Sbjct 204457 GATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTT 204516 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || |||| ||| ||||| || || |||||| || Sbjct 204517 GCCGGTCAGAGTCTTCACGAAAATTTGCATTTTG 204550 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 204127 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 204186 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || || || ||| |||||| ||||| | | Sbjct 204187 GATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 204246 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||| |||| ||||| || || || |||| || ||||| Sbjct 204247 CTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 204306 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 204307 GAAGATCTGCAT 204318 >seq9005 Length=82358 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/156 (73%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || |||||||| || ||||||||||||| |||||||||| | || | || ||||||| Sbjct 12395 TCCTCCAGCTGTTTGCCCGCAAATATCAGATGCTGCTGGTCAGCTGGGATGCCCTCCTTG 12454 Query 35642 TCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGAT 35700 | | || |||| || || | | | | ||||| || | || |||| || ||||| Sbjct 12455 T-CTTGGACTTTGGCGTTGACATTCTTGATGGTGTCACTGGGCTCGACCT-CAAGGTGAT 12512 Query 35701 CGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||||||| || | |||||| |||||||| Sbjct 12513 GGTCTTGCCCGTCAAGGTCTCCACAAAGATCTGCAT 12548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449782052971120