Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq260 174 1e-38 seq8862 132 4e-26 seq80406 109 4e-19 seq37793 98.7 8e-16 seq3013 98.7 8e-16 seq18778 86.0 5e-12 >seq260 Length=805401 Score = 174 bits (192), Expect = 1e-38 Identities = 398/588 (68%), Gaps = 12/588 (2%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| |||| || |||| || ||||||||||| || ||||| | || Sbjct 243450 TTTGTCATCTTTCCTATTCCATTCTATGATATTTGGCAAATGTATAAGAAAGCCGAAGCT 243391 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGAT-TTGACTAA-AGACTTAGCACATTGGATTGCAT 43817 || |||||| |||| || | || ||| || || | | ||| ||||| | ||| || | Sbjct 243390 TCCTTTTGGTCAGCCGAGGTGGTGGATCTTTACAAGGACACTCAGCAC-TGGGAAGGC-T 243333 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 | ||||| | || | | |||||| ||| | ||| |||| || ||||| | ||| || | Sbjct 243332 TGAAACCTGAGGAGAGATATTTTACATCCTATGTTCTGGCTTTCTTTGCAGTGAGTGATG 243273 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCA 43936 | ||||| ||| |||||||||| | || ||| || || ||| ||||| |||||| Sbjct 243272 GCATAGTAAATAAAAATTTGGTGAAGCGATTTAGCCAGAAAAGTCAGATTAC-AGAAGCC 243214 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 | ||||| ||||| || ||||||||||| ||||| | ||||| ||||| || ||| Sbjct 243213 TGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACACACATTCTGAAATCTATAGTTGC 243154 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAA 44056 || || |||| ||||| ||| || | || | | | | || ||||| || ||| Sbjct 243153 CTTATTGATATTTACATTAAA-ATTCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAA 243095 Query 44057 ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAAT 44113 | | || | || | |||||| ||| || | | ||||| | | | Sbjct 243094 ATGATGGCTTGTTTCAAGAAGGCAGCAGATTGGTCCTTGCACTGGATTGGGGACAAAGAG 243035 Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 | | | | || |||| | |||| | | ||| | ||||||| || |||||||| || Sbjct 243034 GCTACCTATGTAGAATGTATTGTAACCTCTGCTGCAGTGGAAGCAATCTTCTTTTCTGGT 242975 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 || | ||| | ||||| ||| | |||||| |||| || ||||||| | || ||||| Sbjct 242974 TCTTCTGCATCAATATTCTGGCTCAAGAAATGAGGACTGGTGCCTGGCCTCACTTTTTCC 242915 Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 ||||| | || | | ||||| ||||| || || || | ||| ||| Sbjct 242914 AATGAACT--TATGCAGAGATGAGGGCTTGCACTGTGACTGTGCCTGC 242869 >seq8862 Length=84653 Score = 132 bits (146), Expect = 4e-26 Identities = 253/372 (68%), Gaps = 1/372 (0%) Strand=Plus/Minus Query 40900 GACATTTTGGAGCAAAATATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATC 40959 || |||| || ||| |||| | |||| | || |||| | | ||||||| | || | Sbjct 49130 GAGATTTNGGGGCAGAATACAAAGATATGAATTCAGATTGTTCAGGTAAAGGAGTAGACC 49071 Query 40960 AATTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGT 41019 | | || || || || || || ||| || |||| || | || | || || ||| Sbjct 49070 AGCTGCAAAAAGTGATTGACACCATCAAAACCAATCCAGACGACAGAAGAATCATCATGT 49011 Query 41020 GCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTC 41079 || ||||| |||| || | | | ||||||| |||| || |||||| | || | Sbjct 49010 ATGCTTGGAATCCAAAAGATCTCCCTCTGATGGCGCTGCCTCCGTGTCATGCCCTCTGCC 48951 Query 41080 AGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGG 41139 || | ||| | || ||||| ||||| || || || | || || ||||| ||||||| Sbjct 48950 AGCTCTACATAGTGAACGGTGAGCTGTCCTGCCAGCTGCACCAGAGGTCAGGAGACATGG 48891 Query 41140 GACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACG 41199 | || || || || || ||||| | || ||||| ||||||||||| ||||| || ||| Sbjct 48890 GCCTGGGCGTGCCTTTCAACATCACCAGCTATGCACTGCTCACGTACATGATCGCGCAC- 48832 Query 41200 TTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTA 41259 | || | | || ||||| ||||| || | || ||||||| |||||||||| | | Sbjct 48831 TCACGGGCCTGCAGCCAGGTGACTTTGTACATAATTTGGGAGATGCACATATTTACCTGA 48772 Query 41260 ATCACATAGAGC 41271 |||||| |||| Sbjct 48771 CTCACATTGAGC 48760 >seq80406 Length=1056 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 ||||||||||| | ||||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 736 CAAGAAGTTCAGGTTACAGAAGCTCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 795 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| ||||| || || ||||| ||||| |||||| Sbjct 796 ATACATTCTGAAATGTATAGTCTCCTTATTGATACTTACATTAAAGAT 843 >seq37793 Length=6272 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || ||||| | |||||||| || |||||||| || || ||||| Sbjct 4484 GGAGAACGTGTTGTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 4425 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 4424 TCAATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 4365 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 4364 ATTAGCAGAGATGA 4351 >seq3013 Length=259453 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || ||||| | |||||||| || |||||||| || || ||||| Sbjct 181957 GGAGAACGTGTTGTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 181898 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 181897 TCAATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 181838 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 181837 ATTAGCAGAGATGA 181824 >seq18778 Length=15734 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 7798 AAAATCCATTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 7857 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| || |||||||| Sbjct 7858 AACGAGTTTCGGAGTATCAGCG 7879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396586435081570