Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq8862 205 8e-48
seq40139 147 2e-30
seq17702 147 2e-30
seq12448 138 9e-28
seq131279 132 4e-26
>seq8862
Length=84653
Score = 205 bits (226), Expect = 8e-48
Identities = 295/411 (72%), Gaps = 4/411 (1%)
Strand=Plus/Plus
Query 29839 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898
|||||||| |||| || | || |||||| | |||||| | || | || | ||||||
Sbjct 48720 GGGAAAGGTCCTGGT-TCTCGCTGAAGCTGAATTTTCAGCCGCTCAATGTGAGTCAGGTA 48778
Query 29899 GACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29958
| || || ||||||| || || ||||| || || || | || || |||| ||| ||
Sbjct 48779 AATATGTGCATCTCCCAAATTATGTACAAAGTCACCTGGCTGCAGGCCCGTGA-GTGCGC 48837
Query 29959 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 30018
|||||||||||||| || | ||||||| |||||| || || || || || ||||||||
Sbjct 48838 GATCATGTACGTGAGCAGTGCATAGCTGGTGATGTTGAAAGGCACGCCCAGGCCCATGTC 48897
Query 30019 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG-TCGCTCACGTAAAACTGACACA 30077
|| |||||||||| ||||| || || ||||| ||| || || | ||| | ||| || |
Sbjct 48898 TCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCACT-ATGTAGAGCTGGCAGA 48956
Query 30078 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30137
||| || |||||||| || ||||| || | ||||| || ||||| || ||| ||
Sbjct 48957 GGGCATGACACGGAGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCATACATGA 49016
Query 30138 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30197
|||| | ||||| ||||| ||| | ||||| ||| | | ||||||||||| || |
Sbjct 49017 TGATTCTTCTGTCGTCTGGATTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTA 49076
Query 30198 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAAT 30248
| || | || || | |||| |||| || |||| ||||| || ||||
Sbjct 49077 CTCCTTTACCTGAACAATCTGAATTCATATCTTTGTATTCTGCCCCNAAAT 49127
>seq40139
Length=6180
Score = 147 bits (162), Expect = 2e-30
Identities = 131/164 (80%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| || |||||||| || |||||||||||||| || | |||||||||||||| || ||
Sbjct 1008 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 949
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| ||||| |||||||| || ||||||||||| ||||| || || ||||| |||| |
Sbjct 948 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 889
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
||||| ||||| || | ||| ||||||||||| || |||| ||
Sbjct 888 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAG 845
>seq17702
Length=18075
Score = 147 bits (162), Expect = 2e-30
Identities = 131/164 (80%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| || |||||||| || |||||||||||||| || | |||||||||||||| || ||
Sbjct 13252 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 13193
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| ||||| |||||||| || ||||||||||| ||||| || || ||||| |||| |
Sbjct 13192 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 13133
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
||||| ||||| || | ||| ||||||||||| || |||| ||
Sbjct 13132 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAG 13089
Score = 134 bits (148), Expect = 1e-26
Identities = 131/169 (78%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281
|||| || ||||| ||||| || ||||||||||||||||| || || || || || ||||
Sbjct 9630 TCATATCTGTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCGAGGT 9571
Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341
| || ||| | ||| ||| ||| |||||| |||||||| |||||||||||| |
Sbjct 9570 CCCCTTCTACTCTGGTGGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGAACCGTTGGCAT 9511
Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
|||||||||| || ||||| |||||| ||||| | |||||||| ||
Sbjct 9510 CCCAGATCTTCACTCCCTTGGAAGAGAGTTCTTTAGCATTTGTGGATCC 9462
>seq12448
Length=43075
Score = 138 bits (152), Expect = 9e-28
Identities = 129/164 (79%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| || |||||||| || |||||||||||||| || | |||||||||||||| || ||
Sbjct 9231 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 9290
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| ||||| |||||||| || ||||||||||| ||||| || || ||||| || | |
Sbjct 9291 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 9350
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
||||| || || || | ||| ||||||||||| || |||| ||
Sbjct 9351 ACGTAGAATTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAG 9394
Score = 134 bits (148), Expect = 1e-26
Identities = 131/169 (78%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281
|||| || ||||| ||||| || ||||||||||||||||| || || || || || ||||
Sbjct 12945 TCATATCTGTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCGAGGT 13004
Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341
| || ||| | ||| ||| ||| |||||| |||||||| |||||||||||| |
Sbjct 13005 CCCCTTCTACTCTGGTGGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGAACCGTTGGCAT 13064
Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
|||||||||| || ||||| |||||| ||||| | |||||||| ||
Sbjct 13065 CCCAGATCTTCACTCCCTTGGAAGAGAGTTCTTTAGCATTTGTGGATCC 13113
>seq131279
Length=636
Score = 132 bits (146), Expect = 4e-26
Identities = 178/248 (72%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 30272 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 30331
|| || ||||| || ||||| ||| ||| ||| ||||||||||||||| |||
Sbjct 1 GGGCCAAGGTCCCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGAA 60
Query 30332 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCT 30391
|||||||| ||||||||||| || ||||| |||||||| ||| | ||||||||| | |
Sbjct 61 CCGTTGGCATCCCAGATCTTCACTCCCTTGGAAGAGAGCTTTTTCGTGTTTGTGGATCTT 120
Query 30392 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGG 30451
||| |||||||||||||| | || | ||||||| || || ||||| || ||
Sbjct 121 TTGATAAACCACAGCAGCTCTTTCAAAATACCCTTCCAGAACACAGCTTTGGTTGTCAGC 180
Query 30452 AGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCC 30511
||| |||| | | |||||| ||| ||||| | ||||| |||| | |||
Sbjct 181 AGGTGAAATTCATCTCTGAGGCTGTAGTGCGCCTGCAGGCAGAACACCGACAGGGTGCCC 240
Query 30512 GTGCCCGT 30519
||||||||
Sbjct 241 GTGCCCGT 248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405421463187288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |