Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq1029 104 1e-17
seq633 89.7 3e-13
>seq1029
Length=469353
Score = 104 bits (114), Expect = 1e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551
|||| ||||| || |||||| ||| || |||||||| || || || || || || |
Sbjct 371623 CGCAGGACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGTCCA 371682
Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611
||||| || ||||| || ||||| || || | ||| ||||| || || | |||||||||
Sbjct 371683 TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTG 371742
Query 34612 TCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670
||| |||| || | || ||| | ||| ||||| | ||| || || | ||| ||
Sbjct 371743 TCTTGGATC-TTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGAT 371801
Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || ||||| | || ||||| || ||||||||
Sbjct 371802 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 371837
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| | ||||| || | ||| ||| || || ||||| || || ||
Sbjct 371839 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 371898
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| || ||||| || || || || || | ||| ||||| || ||
Sbjct 371899 AGGGTGCGACCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGG 371958
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| |||| || | || ||| | ||| ||||| | ||| ||
Sbjct 371959 ATCCCCTCCTTGTCTTGGATC-TTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGAC 372017
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | ||| || || || ||||| | || ||||| || ||||||||
Sbjct 372018 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 372065
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| | ||||| || | ||| ||| || || ||||| || || ||
Sbjct 372067 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 372126
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| || ||||| || || || || || | ||| ||||| || ||
Sbjct 372127 AGGGTGCGACCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGG 372186
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| |||| || | || ||| | ||| ||||| | ||| ||
Sbjct 372187 ATGCCCTCCTTGTCTTGGATC-TTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGAC 372245
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | ||| || || || ||||| | || ||||| || ||||||||
Sbjct 372246 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 372293
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| | ||||| || | ||| ||| || || ||||| || || ||
Sbjct 372295 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 372354
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| || ||||| || || || || || | ||| ||||| || ||
Sbjct 372355 AGGGTGCGACCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGG 372414
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| |||| || | || ||| | ||| ||||| | ||| ||
Sbjct 372415 ATGCCCTCCTTGTCTTGGATC-TTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGAC 372473
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | ||| || || || ||||| | || ||||| || ||||||||
Sbjct 372474 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 372521
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| | ||||| || | ||| ||| || || ||||| || || ||
Sbjct 372523 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 372582
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| || ||||| || || || || || | ||| ||||| || ||
Sbjct 372583 AGGGTGCGACCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGG 372642
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| |||| || | || ||| | ||| ||||| | ||| ||
Sbjct 372643 ATGCCCTCCTTGTCTTGGATC-TTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGAC 372701
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | ||| || || || ||||| | || ||||| || ||||||||
Sbjct 372702 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 372749
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| | ||||| || | ||| ||| || || ||||| || || ||
Sbjct 372751 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 372810
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| || ||||| || || || || || | ||| ||||| || ||
Sbjct 372811 AGGGTGCGACCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGG 372870
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| |||| || | || ||| | || ||||| | ||| ||
Sbjct 372871 ATGCCCTCCTTGTCTTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGAC 372929
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | ||| || || || ||||| | || |||||||| ||||||||
Sbjct 372930 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 372977
>seq633
Length=582679
Score = 89.7 bits (98), Expect = 3e-13
Identities = 161/233 (69%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| | ||||| || | ||| ||| || || ||||| ||||| |||
Sbjct 204320 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAA 204379
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| || || || || ||||| || | | ||| ||||| || ||
Sbjct 204380 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 204439
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658
| || || || || |||||| | || || | || ||||| | ||||||
Sbjct 204440 ATGCCTTCTTTATCCTGGATCTTG-GCCTTCACATTCTCGATGGTGTCACTGGGCTCCAC 204498
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711
||||| ||| || || || ||||| | || ||||| ||||| ||||| ||||
Sbjct 204499 TTCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAAATTTGCATTTTGA 204551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314041026122762
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |