Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq8862 264 1e-65 seq12448 176 4e-39 seq40139 167 2e-36 seq17702 167 2e-36 seq131279 149 6e-31 >seq8862 Length=84653 Score = 264 bits (292), Expect = 1e-65 Identities = 288/381 (76%), Gaps = 1/381 (0%) Strand=Plus/Plus Query 6487 TCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCG 6546 ||||| |||||||||| ||||| |||| || ||||| || ||||| || ||||| Sbjct 48701 TCGAAGGATTTTGAGCTTCGGGAAAGGTCCTGGTTCTCGCTGAAGCTGAATTTTCAGCCG 48760 Query 6547 CTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC 6606 ||| ||||| ||||||| ||||| ||||| ||||| |||| || | || || || Sbjct 48761 CTCAATGTGAGTCAGGTAAATATGTGCATCTCCCAAATTATGTACAAAGTCACCTGGCTG 48820 Query 6607 CAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGG 6666 || ||| || || |||||||||||||||||||| || || || | |||||||| || Sbjct 48821 CAGGCCCGTGAG-TGCGCGATCATGTACGTGAGCAGTGCATAGCTGGTGATGTTGAAAGG 48879 Query 6667 CACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC 6726 ||| || | ||||||||||| || | || | ||||||||||||||||| || ||| | Sbjct 48880 CACGCCCAGGCCCATGTCTCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCAC 48939 Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 | ||||| |||||||||| || ||||| || |||||||||||||||||||| || || Sbjct 48940 TATGTAGAGCTGGCAGAGGGCATGACACGGAGGCAGCGCCATCAGAGGGAGATCTTTTGG 48999 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 ||||| || |||| | ||| |||||||| || || || || | |||||| ||||| Sbjct 49000 ATTCCAAGCATACATGATGATTCTTCTGTCGTCTGGATTGGTTTTGATGGTGTCAATCAC 49059 Query 6847 GTACTGCAGCTGGTCCGCTCC 6867 | ||||||||||| |||| Sbjct 49060 TTTTTGCAGCTGGTCTACTCC 49080 Score = 264 bits (292), Expect = 1e-65 Identities = 288/381 (76%), Gaps = 1/381 (0%) Strand=Plus/Minus Query 34478 GGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGG 34537 |||| ||||||||||| | ||||| |||||| | || || || || |||||||| Sbjct 49080 GGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCAAAACCAATCCAGACGACAGAAGA 49021 Query 34538 ATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCAC 34597 ||| | |||| || ||||| || || |||||||||||||||||||| || ||||| || Sbjct 49020 ATCATCATGTATGCTTGGAATCCAAAAGATCTCCCTCTGATGGCGCTGCCTCCGTGTCAT 48961 Query 34598 ACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCG 34657 |||||||||| ||||| | | ||| || ||||||||||||||||| | || | || Sbjct 48960 GCCCTCTGCCAGCTCTACATAGTGAACGGTGAGCTGTCCTGCCAGCTGCACCAGAGGTCA 48901 Query 34658 GGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATG 34717 ||||||||||| | || ||||| |||||||| | || || || ||||||||||||||| Sbjct 48900 GGAGACATGGGCCTGGGCGTGCCTTTCAACATCACCAGCTATGCACTGCTCACGTACATG 48841 Query 34718 ATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCAT 34777 ||||| || || ||| || || || || | || |||| ||||| ||||| ||| Sbjct 48840 ATCGCGCA-CTCACGGGCCTGCAGCCAGGTGACTTTGTACATAATTTGGGAGATGCACAT 48782 Query 34778 ATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTC 34837 || ||||||| ||||| |||||||| || ||||| || ||||| || |||| ||| Sbjct 48781 ATTTACCTGACTCACATTGAGCGGCTGAAAATTCAGCTTCAGCGAGAACCAGGACCTTTC 48722 Query 34838 CCCCAGCTCAAAATTATTCGA 34858 || |||||||||| ||||| Sbjct 48721 CCGAAGCTCAAAATCCTTCGA 48701 >seq12448 Length=43075 Score = 176 bits (194), Expect = 4e-39 Identities = 138/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || ||||||||||||||||| || || || || || |||||||| ||||| || | Sbjct 9239 GACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGCACGCCGAG 9298 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| || | || || ||||||||||||||||| |||||| | |||||||| Sbjct 9299 GCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACGTAGAA 9358 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||||||| |||||||| || ||| |||||||||||||||| Sbjct 9359 TTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAGAGGGAGATC 9403 Score = 176 bits (194), Expect = 4e-39 Identities = 138/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||||||||||| ||| || |||||||| ||||||||||||||||||| | |||| Sbjct 9403 GATCTCCCTCTGATGGTGCTGCCTCCGTGCCATGCCCTCTGCCAATTCTACGTGGTGAAT 9344 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || | || ||||||||||| | || ||||| ||| Sbjct 9343 GGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTCGGCGTGCCTTTC 9284 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 ||||| || || || || || ||||||||||||||||| || ||| Sbjct 9283 AACATCGCCAGCTATGCGCTTCTCACGTACATGATCGCGCACGTC 9239 Score = 105 bits (116), Expect = 6e-18 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || ||||| | ||| |||| || | Sbjct 12956 TATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCGAGGTC-CCCTTCTAC 13014 Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | ||| ||| ||| | |||||||||||||||| || |||| || ||||||||||| Sbjct 13015 TCTGGTGGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGAACCGTTGGCATCCCAGATCTT 13074 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 ||| ||| ||| ||||| || || | || |||| Sbjct 13075 CACTCCCTTGGAAGAGAGTTCTTTAGCATTTGTGG 13109 Score = 105 bits (116), Expect = 6e-18 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || || ||||| ||| ||| |||||||||||||| || |||| || | Sbjct 13109 CCACAAATGCTAAAGAACTCTCTTCCAAGGGAGTGAAGATCTGGGATGCCAACGGTTCCC 13050 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTC 34411 ||||||||||||||| | ||| ||| ||| | | || |||| ||| | ||||| || Sbjct 13049 GAGACTTTCTGGACAGCCTGGGATTCTCCACCAGAGTAGAAGGG-GACCTCGGCCCAGTT 12991 Query 34412 TACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || || ||||||||||| || |||||||| || || Sbjct 12990 TATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATA 12956 >seq40139 Length=6180 Score = 167 bits (184), Expect = 2e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||||||||||| ||| || |||||||| |||||||||| |||||||| | ||| Sbjct 836 GATCTCCCTCTGATGGTGCTGCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAAC 895 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || | || ||||||||||| | || ||||| ||| Sbjct 896 GGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTCGGCGTGCCTTTC 955 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 ||||| || || || || || ||||||||||||||||| || ||| Sbjct 956 AACATCGCCAGCTATGCGCTTCTCACGTACATGATCGCGCACGTC 1000 Score = 167 bits (184), Expect = 2e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || ||||||||||||||||| || || || || || |||||||| ||||| || | Sbjct 1000 GACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGCACGCCGAG 941 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| || | || || ||||||||||||||||| || ||| | |||||||| Sbjct 940 GCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAA 881 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||||| |||||||| || ||| |||||||||||||||| Sbjct 880 CTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAGAGGGAGATC 836 >seq17702 Length=18075 Score = 167 bits (184), Expect = 2e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||||||||||| ||| || |||||||| |||||||||| |||||||| | ||| Sbjct 13080 GATCTCCCTCTGATGGTGCTGCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAAC 13139 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || | || ||||||||||| | || ||||| ||| Sbjct 13140 GGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTCGGCGTGCCTTTC 13199 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 ||||| || || || || || ||||||||||||||||| || ||| Sbjct 13200 AACATCGCCAGCTATGCGCTTCTCACGTACATGATCGCGCACGTC 13244 Score = 167 bits (184), Expect = 2e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || ||||||||||||||||| || || || || || |||||||| ||||| || | Sbjct 13244 GACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGCACGCCGAG 13185 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| || | || || ||||||||||||||||| || ||| | |||||||| Sbjct 13184 GCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAA 13125 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||||| |||||||| || ||| |||||||||||||||| Sbjct 13124 CTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAGAGGGAGATC 13080 Score = 105 bits (116), Expect = 6e-18 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || || ||||| ||| ||| |||||||||||||| || |||| || | Sbjct 9466 CCACAAATGCTAAAGAACTCTCTTCCAAGGGAGTGAAGATCTGGGATGCCAACGGTTCCC 9525 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTC 34411 ||||||||||||||| | ||| ||| ||| | | || |||| ||| | ||||| || Sbjct 9526 GAGACTTTCTGGACAGCCTGGGATTCTCCACCAGAGTAGAAGGG-GACCTCGGCCCAGTT 9584 Query 34412 TACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || || ||||||||||| || |||||||| || || Sbjct 9585 TATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATA 9619 Score = 105 bits (116), Expect = 6e-18 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || ||||| | ||| |||| || | Sbjct 9619 TATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCGAGGTC-CCCTTCTAC 9561 Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | ||| ||| ||| | |||||||||||||||| || |||| || ||||||||||| Sbjct 9560 TCTGGTGGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGAACCGTTGGCATCCCAGATCTT 9501 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 ||| ||| ||| ||||| || || | || |||| Sbjct 9500 CACTCCCTTGGAAGAGAGTTCTTTAGCATTTGTGG 9466 >seq131279 Length=636 Score = 149 bits (164), Expect = 6e-31 Identities = 222/314 (71%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 6938 GGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGAC 6997 ||||| | ||| || || || | | | ||| ||| | |||||| |||||||||||| Sbjct 1 GGGCCAAGGTCCCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGAA 60 Query 6998 CCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCC 7057 |||| || |||||||||||||| ||| ||| ||||||| || ||||| |||| | Sbjct 61 CCGTTGGCATCCCAGATCTTCACTCCCTTGGAAGAGAGCTTTTTCGTGTTTGTGGATCTT 120 Query 7058 CTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGC 7117 | | |||||||||||||| | | | ||||||||| ||||| ||| || |||||| Sbjct 121 TTGATAAACCACAGCAGCTCTTTCAAAATACCCTTCCAGAACACAGCTTTGGTTGTCAGC 180 Query 7118 AGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCC 7177 || ||||||| | | ||| |||| | ||||| || |||||| || ||||| ||| Sbjct 181 AGGTGAAATTCATCTCTGAGGCTGTAGTGCGCCTGCAGGCAGAACACCGACAGGGTGCCC 240 Query 7178 GTCCCGGTCCGGTCCCCCTTCCGGTAGCCCTCCCTGAGGATCCGCGCCACCTGATACAGA 7237 || || || ||| ||| ||| | ||| | ||| | || ||||||| ||| Sbjct 241 GTGCCCGTGTGGTGTCCC-TCCTGAAGCTGCAGCGCAGGGTGTGCTCCACCTGCCCCAGG 299 Query 7238 TACTGCCACTCCCC 7251 | ||||| |||||| Sbjct 300 TGCTGCCGCTCCCC 313 Score = 149 bits (164), Expect = 6e-31 Identities = 222/314 (71%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 34094 GGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGGAAGGGG 34153 |||||| ||||| | ||| ||||||| || | ||| | ||| | ||| ||| Sbjct 313 GGGGAGCGGCAGCACCTGGGGCAGGTGGAGCACACCCTGCGCTGCAGCTTCAGGA-GGGA 255 Query 34154 GACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGG 34213 ||| || || ||||| ||||| || |||||| || ||||| | |||| ||| | Sbjct 254 CACCACACGGGCACGGGCACCCTGTCGGTGTTCTGCCTGCAGGCGCACTACAGCCTCAGA 195 Query 34214 GGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTG 34273 | ||||||| |||||||| || ||| ||||| ||||||||| | | | |||||| Sbjct 194 GATGAATTTCACCTGCTGACAACCAAAGCTGTGTTCTGGAAGGGTATTTTGAAAGAGCTG 135 Query 34274 CTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATC 34333 |||||||| | | | |||| ||||| || ||||||| ||| ||| ||||||||| Sbjct 134 CTGTGGTTTATCAAAAGATCCACAAACACGAAAAAGCTCTCTTCCAAGGGAGTGAAGATC 75 Query 34334 TGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAG 34393 ||||| || |||| |||||||||||| |||||| | ||| ||| | | | || || Sbjct 74 TGGGATGCCAACGGTTCTCGAGACTTTTTGGACAGCCTGGGATTCTCCACCAGAGAAGAA 15 Query 34394 GGCGACTTGGGCCC 34407 || ||| | ||||| Sbjct 14 GGGGACCTTGGCCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447256532794080