Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq964 201 9e-47 seq147 122 7e-23 seq8862 114 1e-20 >seq964 Length=529263 Score = 201 bits (222), Expect = 9e-47 Identities = 239/319 (75%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 1209 GTTGTAACCCAGGATGAAGCAACACCACTTGGAGACCCC-GTTTCTATTAAG-TGTTTTT 1266 || || |||||||||||| | | || || | || || | ||| ||||| |||| | Sbjct 295309 GTGGTGACCCAGGATGAAAGAG-AGCAGCTGAACACACCTGCTTCC-TTAAGATGTTCTC 295366 Query 1267 TAGAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAG 1326 | |||| | || ||||| | ||||| |||||||| ||| || || ||||||||| Sbjct 295367 TGCAAACTTCTCAGGAAGTCTTGATTGTGACATGGCAGAAAAAGAAGGCTGCAAGCCCAG 295426 Query 1327 AAAACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATA 1386 ||||||||| ||| || || || |||| |||||||| || ||||| || || || || | Sbjct 295427 AAAACATGGTCACCTTCAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTATAAGGACA 295486 Query 1387 AAATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACAT 1446 | || ||||| ||| |||| ||||| || ||| |||| || ||||| |||||||| || | Sbjct 295487 AGATAAACATCACTCAGCTGGGACTCCAGAACTCAACCATCACCTTTTGGAACACCACCT 295546 Query 1447 TGGATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAG 1506 |||| ||||||||||| |||| |||| || || || ||||| ||||||||||| |||| Sbjct 295547 TGGAGGATGAAGGGTGTTACATGTGTCACTTCAATACCTTTGGTTCTGGGAAGATCTCAG 295606 Query 1507 GAATAGGGTGTCTAACCCT 1525 ||| || || || || || Sbjct 295607 GAACAGCCTGCCTCACTCT 295625 >seq147 Length=976461 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 764622 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 764563 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 764562 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCACCCCTGGTGGACAAC 764503 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 764502 ATCGCCCTGTGGATGACTGA 764483 >seq8862 Length=84653 Score = 114 bits (126), Expect = 1e-20 Identities = 174/241 (72%), Gaps = 5/241 (2%) Strand=Plus/Plus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATC-CCCAATTGTATG 118514 || || | |||||| ||||||||||| ||| || | ||| ||||| ||||| | |||| Sbjct 48744 AGCTGAATTTTCAGCCGCTCAATGTGAGTCAGGTAAATATGTGCATCTCCCAAAT-TATG 48802 Query 118515 TATGAATTCACCAGG-TGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGT 118573 || || ||||| || || | |||| || | ||| || |||||||| || | || | Sbjct 48803 TACAAAGTCACCTGGCTGCAGGCCC-GTGA-GTGCGCGATCATGTACGTGAGCAGTGCAT 48860 Query 118574 AGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGC 118633 |||||| | || ||||| || ||||| ||||||||| |||| ||||||| || |||| Sbjct 48861 AGCTGGTGATGTTGAAAGGCACGCCCAGGCCCATGTCTCCTGACCTCTGGTGCAGCTGGC 48920 Query 118634 AAGAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCA 118693 | || ||||| ||||| | | || | ||| | | | ||||| |||||||| ||| Sbjct 48921 AGGACAGCTCACCGTTCACTATGTAGAGCTGGCAGAGGGCATGACACGGAGGCAGCGCCA 48980 Query 118694 T 118694 | Sbjct 48981 T 48981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413569996517896