Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq964 201 9e-47
seq147 122 7e-23
seq8862 114 1e-20
>seq964
Length=529263
Score = 201 bits (222), Expect = 9e-47
Identities = 239/319 (75%), Gaps = 4/319 (1%)
Strand=Plus/Plus
Query 1209 GTTGTAACCCAGGATGAAGCAACACCACTTGGAGACCCC-GTTTCTATTAAG-TGTTTTT 1266
|| || |||||||||||| | | || || | || || | ||| ||||| |||| |
Sbjct 295309 GTGGTGACCCAGGATGAAAGAG-AGCAGCTGAACACACCTGCTTCC-TTAAGATGTTCTC 295366
Query 1267 TAGAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAG 1326
| |||| | || ||||| | ||||| |||||||| ||| || || |||||||||
Sbjct 295367 TGCAAACTTCTCAGGAAGTCTTGATTGTGACATGGCAGAAAAAGAAGGCTGCAAGCCCAG 295426
Query 1327 AAAACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATA 1386
||||||||| ||| || || || |||| |||||||| || ||||| || || || || |
Sbjct 295427 AAAACATGGTCACCTTCAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTATAAGGACA 295486
Query 1387 AAATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACAT 1446
| || ||||| ||| |||| ||||| || ||| |||| || ||||| |||||||| || |
Sbjct 295487 AGATAAACATCACTCAGCTGGGACTCCAGAACTCAACCATCACCTTTTGGAACACCACCT 295546
Query 1447 TGGATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAG 1506
|||| ||||||||||| |||| |||| || || || ||||| ||||||||||| ||||
Sbjct 295547 TGGAGGATGAAGGGTGTTACATGTGTCACTTCAATACCTTTGGTTCTGGGAAGATCTCAG 295606
Query 1507 GAATAGGGTGTCTAACCCT 1525
||| || || || || ||
Sbjct 295607 GAACAGCCTGCCTCACTCT 295625
>seq147
Length=976461
Score = 122 bits (134), Expect = 7e-23
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | |||||||| ||||||||| | ||||| || |||||||||
Sbjct 764622 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 764563
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| | | || | |||| || ||||||
Sbjct 764562 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCACCCCTGGTGGACAAC 764503
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 764502 ATCGCCCTGTGGATGACTGA 764483
>seq8862
Length=84653
Score = 114 bits (126), Expect = 1e-20
Identities = 174/241 (72%), Gaps = 5/241 (2%)
Strand=Plus/Plus
Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATC-CCCAATTGTATG 118514
|| || | |||||| ||||||||||| ||| || | ||| ||||| ||||| | ||||
Sbjct 48744 AGCTGAATTTTCAGCCGCTCAATGTGAGTCAGGTAAATATGTGCATCTCCCAAAT-TATG 48802
Query 118515 TATGAATTCACCAGG-TGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGT 118573
|| || ||||| || || | |||| || | ||| || |||||||| || | || |
Sbjct 48803 TACAAAGTCACCTGGCTGCAGGCCC-GTGA-GTGCGCGATCATGTACGTGAGCAGTGCAT 48860
Query 118574 AGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGC 118633
|||||| | || ||||| || ||||| ||||||||| |||| ||||||| || ||||
Sbjct 48861 AGCTGGTGATGTTGAAAGGCACGCCCAGGCCCATGTCTCCTGACCTCTGGTGCAGCTGGC 48920
Query 118634 AAGAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCA 118693
| || ||||| ||||| | | || | ||| | | | ||||| |||||||| |||
Sbjct 48921 AGGACAGCTCACCGTTCACTATGTAGAGCTGGCAGAGGGCATGACACGGAGGCAGCGCCA 48980
Query 118694 T 118694
|
Sbjct 48981 T 48981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413569996517896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |