Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq8862 217 1e-51
seq40139 167 2e-36
seq17702 167 2e-36
seq12448 158 1e-33
seq131279 125 6e-24
>seq8862
Length=84653
Score = 217 bits (240), Expect = 1e-51
Identities = 272/365 (75%), Gaps = 6/365 (2%)
Strand=Plus/Plus
Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTG-GTCAAGGT 29669
|||||||| |||| || | || |||||||| ||||| | || | ||| |||| |||
Sbjct 48720 GGGAAAGGTCCTGGT-TCTCGCTGAAGCTGAATTTTCAGCCGCTCAATGTGAGTCA-GGT 48777
Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729
| | || |||||||||| | || ||||| || || || | || || |||| ||| |
Sbjct 48778 AAATATGTGCATCTCCCAAATTATGTACAAAGTCACCTGGCTGCAGGCCCGTGA-GTGCG 48836
Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789
| |||||||||||||| || | ||||||| |||||| || ||||| || || |||||||
Sbjct 48837 CGATCATGTACGTGAGCAGTGCATAGCTGGTGATGTTGAAAGGCACGCCCAGGCCCATGT 48896
Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG-TCGCTCACGTAAAACTGACAC 29848
| ||||||||||||| |||||||| || ||||| ||| || || | ||| | ||| ||
Sbjct 48897 CTCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCACT-ATGTAGAGCTGGCAG 48955
Query 29849 ATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACG 29908
| |||||| |||||||| || ||||| ||| | ||||| || ||||| ||| ||| |
Sbjct 48956 AGGGCATGACACGGAGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCATACATG 49015
Query 29909 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 29968
||||| | ||||| ||||| ||| | ||||| ||| | | ||||||||||| ||
Sbjct 49016 ATGATTCTTCTGTCGTCTGGATTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCT 49075
Query 29969 ACCCC 29973
|| ||
Sbjct 49076 ACTCC 49080
>seq40139
Length=6180
Score = 167 bits (184), Expect = 2e-36
Identities = 136/165 (82%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||||||| || |||||||||||||| || | |||||||||||||| || |||
Sbjct 1008 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 949
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| ||||| |||||||| |||||||||||||| |||||||| || ||||| |||| |
Sbjct 948 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 889
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
||||| ||||| || | ||||||||||||||| || |||| |||
Sbjct 888 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAGA 844
>seq17702
Length=18075
Score = 167 bits (184), Expect = 2e-36
Identities = 136/165 (82%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||||||| || |||||||||||||| || | |||||||||||||| || |||
Sbjct 13252 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 13193
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| ||||| |||||||| |||||||||||||| |||||||| || ||||| |||| |
Sbjct 13192 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 13133
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
||||| ||||| || | ||||||||||||||| || |||| |||
Sbjct 13132 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAGA 13088
Score = 111 bits (122), Expect = 1e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
||||||||||||||||| || || || || || ||||| || ||| | ||| |||
Sbjct 9607 AAATGCCTCCACTGGAAGCCATAAACTGGGCCGAGGTCCCCTTCTACTCTGGTGGAGAAT 9548
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
||| |||||| |||||||| |||||||||||| ||||||||||| || |||||
Sbjct 9547 CCCAGGCTGTCCAGAAAGTCTCGGGAACCGTTGGCATCCCAGATCTTCACTCCCTTGGAA 9488
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162
||||| ||||| | |||||||| ||
Sbjct 9487 GAGAGTTCTTTAGCATTTGTGGATCC 9462
>seq12448
Length=43075
Score = 158 bits (174), Expect = 1e-33
Identities = 134/165 (81%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||||||| || |||||||||||||| || | |||||||||||||| || |||
Sbjct 9231 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 9290
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| ||||| |||||||| |||||||||||||| |||||||| || ||||| || | |
Sbjct 9291 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 9350
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
||||| || || || | ||||||||||||||| || |||| |||
Sbjct 9351 ACGTAGAATTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAGA 9395
Score = 111 bits (122), Expect = 1e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
||||||||||||||||| || || || || || ||||| || ||| | ||| |||
Sbjct 12968 AAATGCCTCCACTGGAAGCCATAAACTGGGCCGAGGTCCCCTTCTACTCTGGTGGAGAAT 13027
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
||| |||||| |||||||| |||||||||||| ||||||||||| || |||||
Sbjct 13028 CCCAGGCTGTCCAGAAAGTCTCGGGAACCGTTGGCATCCCAGATCTTCACTCCCTTGGAA 13087
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162
||||| ||||| | |||||||| ||
Sbjct 13088 GAGAGTTCTTTAGCATTTGTGGATCC 13113
>seq131279
Length=636
Score = 125 bits (138), Expect = 6e-24
Identities = 186/263 (71%), Gaps = 2/263 (1%)
Strand=Plus/Plus
Query 30044 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 30103
|| || ||||| || ||||| ||| ||| ||| ||||||||||||||| |||
Sbjct 1 GGGCCAAGGTCCCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGAA 60
Query 30104 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCT 30163
|||||||| ||||||||||| || ||||| ||||||| ||| | ||||||||| | |
Sbjct 61 CCGTTGGCATCCCAGATCTTCACTCCCTTGGAAGAGAGCTTTTTCGTGTTTGTGGATCTT 120
Query 30164 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGG 30223
||| |||||||||||||| | || | ||||||| || || ||||| || ||
Sbjct 121 TTGATAAACCACAGCAGCTCTTTCAAAATACCCTTCCAGAACACAGCTTTGGTTGTCAGC 180
Query 30224 AGGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCC 30283
||| |||| | | |||||| ||| |||||| | |||| |||| | |||
Sbjct 181 AGGTGAAATTCATCTCTGAGGCTGTAGTGCGCCTGCAGGCAGAACACCGACAGGGTGCCC 240
Query 30284 GTGCC--TGTCCTGTCTCCCCTG 30304
||||| ||| |||| | ||||
Sbjct 241 GTGCCCGTGTGGTGTCCCTCCTG 263
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405274585235404
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |