Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq8862 217 1e-51 seq40139 167 2e-36 seq17702 167 2e-36 seq12448 158 1e-33 seq131279 125 6e-24 >seq8862 Length=84653 Score = 217 bits (240), Expect = 1e-51 Identities = 272/365 (75%), Gaps = 6/365 (2%) Strand=Plus/Plus Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTG-GTCAAGGT 29669 |||||||| |||| || | || |||||||| ||||| | || | ||| |||| ||| Sbjct 48720 GGGAAAGGTCCTGGT-TCTCGCTGAAGCTGAATTTTCAGCCGCTCAATGTGAGTCA-GGT 48777 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | || |||||||||| | || ||||| || || || | || || |||| ||| | Sbjct 48778 AAATATGTGCATCTCCCAAATTATGTACAAAGTCACCTGGCTGCAGGCCCGTGA-GTGCG 48836 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | |||||||||||||| || | ||||||| |||||| || ||||| || || ||||||| Sbjct 48837 CGATCATGTACGTGAGCAGTGCATAGCTGGTGATGTTGAAAGGCACGCCCAGGCCCATGT 48896 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG-TCGCTCACGTAAAACTGACAC 29848 | ||||||||||||| |||||||| || ||||| ||| || || | ||| | ||| || Sbjct 48897 CTCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCACT-ATGTAGAGCTGGCAG 48955 Query 29849 ATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACG 29908 | |||||| |||||||| || ||||| ||| | ||||| || ||||| ||| ||| | Sbjct 48956 AGGGCATGACACGGAGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCATACATG 49015 Query 29909 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 29968 ||||| | ||||| ||||| ||| | ||||| ||| | | ||||||||||| || Sbjct 49016 ATGATTCTTCTGTCGTCTGGATTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCT 49075 Query 29969 ACCCC 29973 || || Sbjct 49076 ACTCC 49080 >seq40139 Length=6180 Score = 167 bits (184), Expect = 2e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||||||| || |||||||||||||| || | |||||||||||||| || ||| Sbjct 1008 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 949 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || ||||| |||||||| |||||||||||||| |||||||| || ||||| |||| | Sbjct 948 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 889 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | ||||||||||||||| || |||| ||| Sbjct 888 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAGA 844 >seq17702 Length=18075 Score = 167 bits (184), Expect = 2e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||||||| || |||||||||||||| || | |||||||||||||| || ||| Sbjct 13252 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 13193 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || ||||| |||||||| |||||||||||||| |||||||| || ||||| |||| | Sbjct 13192 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 13133 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | ||||||||||||||| || |||| ||| Sbjct 13132 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAGA 13088 Score = 111 bits (122), Expect = 1e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || || ||||| || ||| | ||| ||| Sbjct 9607 AAATGCCTCCACTGGAAGCCATAAACTGGGCCGAGGTCCCCTTCTACTCTGGTGGAGAAT 9548 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| |||||| |||||||| |||||||||||| ||||||||||| || ||||| Sbjct 9547 CCCAGGCTGTCCAGAAAGTCTCGGGAACCGTTGGCATCCCAGATCTTCACTCCCTTGGAA 9488 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||| ||||| | |||||||| || Sbjct 9487 GAGAGTTCTTTAGCATTTGTGGATCC 9462 >seq12448 Length=43075 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||||||| || |||||||||||||| || | |||||||||||||| || ||| Sbjct 9231 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 9290 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || ||||| |||||||| |||||||||||||| |||||||| || ||||| || | | Sbjct 9291 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 9350 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| || || || | ||||||||||||||| || |||| ||| Sbjct 9351 ACGTAGAATTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAGA 9395 Score = 111 bits (122), Expect = 1e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || || ||||| || ||| | ||| ||| Sbjct 12968 AAATGCCTCCACTGGAAGCCATAAACTGGGCCGAGGTCCCCTTCTACTCTGGTGGAGAAT 13027 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| |||||| |||||||| |||||||||||| ||||||||||| || ||||| Sbjct 13028 CCCAGGCTGTCCAGAAAGTCTCGGGAACCGTTGGCATCCCAGATCTTCACTCCCTTGGAA 13087 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||| ||||| | |||||||| || Sbjct 13088 GAGAGTTCTTTAGCATTTGTGGATCC 13113 >seq131279 Length=636 Score = 125 bits (138), Expect = 6e-24 Identities = 186/263 (71%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 30044 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 30103 || || ||||| || ||||| ||| ||| ||| ||||||||||||||| ||| Sbjct 1 GGGCCAAGGTCCCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGAA 60 Query 30104 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCT 30163 |||||||| ||||||||||| || ||||| ||||||| ||| | ||||||||| | | Sbjct 61 CCGTTGGCATCCCAGATCTTCACTCCCTTGGAAGAGAGCTTTTTCGTGTTTGTGGATCTT 120 Query 30164 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGG 30223 ||| |||||||||||||| | || | ||||||| || || ||||| || || Sbjct 121 TTGATAAACCACAGCAGCTCTTTCAAAATACCCTTCCAGAACACAGCTTTGGTTGTCAGC 180 Query 30224 AGGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCC 30283 ||| |||| | | |||||| ||| |||||| | |||| |||| | ||| Sbjct 181 AGGTGAAATTCATCTCTGAGGCTGTAGTGCGCCTGCAGGCAGAACACCGACAGGGTGCCC 240 Query 30284 GTGCC--TGTCCTGTCTCCCCTG 30304 ||||| ||| |||| | |||| Sbjct 241 GTGCCCGTGTGGTGTCCCTCCTG 263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405274585235404