Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq260 174 1e-38
seq671 129 5e-25
seq80406 100 2e-16
seq37793 98.7 8e-16
seq3013 98.7 8e-16
seq120339 95.1 1e-14
seq12598 95.1 1e-14
seq10680 89.7 4e-13
seq18778 86.0 5e-12
seq6551 82.4 7e-11
>seq260
Length=805401
Score = 174 bits (192), Expect = 1e-38
Identities = 556/855 (65%), Gaps = 23/855 (3%)
Strand=Plus/Plus
Query 4287 AAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTG 4346
|| ||||| || ||||||| |||||||| |||||||| ||||| ||||||| | | ||
Sbjct 242609 AAGTTAGTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAAGGGATTAGCTACTCTG 242668
Query 4347 TAATGTTTTTCACACTTTAGAGCTACAAGC---AATCGGTCAGCTACAAATTCTATATAC 4403
|| || | | || | | ||| || | || | || | || || ||
Sbjct 242669 AAAACCTTGCTAAAACCCAG---TTCCAGCCTAAACCTTTCTTCCACGACTTAAATGTAG 242725
Query 4404 TGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAAC 4463
|| |||| | | |||| || ||||| | ||||||| | || | | | |||
Sbjct 242726 TGCTTCATTAAGGTGAAGTTCATCCCAATGAGCTTCACAGGCAAGGCCTCCCTAAGGAAC 242785
Query 4464 TCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTA 4523
|| |||||||| || | || | || ||||| ||||| | | | | | |||| |||
Sbjct 242786 TCCTGTTCTATCCTTGCAGCATTGGTAATTATTTCTTTCACTCTCTGCTCTGATGTTTTG 242845
Query 4524 TTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA 4583
| || |||| | ||| || || ||| | ||||| ||||| || || |||||||
Sbjct 242846 TGTAGAAAGTGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGCCCTCATCTCTGC-- 242903
Query 4584 ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATA 4643
|| ||||| || ||||| || | || |||| | |||| || || ||||| |||||
Sbjct 242904 ATAAGTTCATTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCTTGAGCCAGAATATT 242963
Query 4644 GCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC 4703
| ||| | || ||||||||||| || |||| || || ||| | | ||| | | |
Sbjct 242964 GATGCAGAAGAACCAGAAAAGAAGATTGCTTCCACTGCAGCAGAGGTTACAATAC---AT 243020
Query 4704 CCGAACGAGCTGGC---TTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTA 4760
| | || | || |||||| |||||| | || | ||| | ||| |||||
Sbjct 243021 TCTACATAGGTAGCCTCTTTGTCCCCAATCCAGTGCAAGGACCAATCTGCTGCCTTCTTG 243080
Query 4761 ACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTTCAAATGGGTCTTGA 4817
| || | || | | || || || || | ||| |||| || ||| || |
Sbjct 243081 AAACAAGCCATCATTTCAATGGCATTGAAGAGAAATTCCCTTTCTT----TGGAATTTTA 243136
Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877
|| ||| | || || || ||||| |||||||||||| | ||||| || ||||| ||
Sbjct 243137 ATGTAAATATCAATAAGGCAACTATAGATTTCAGAATGTGTGTTTTCCATGGCAATTTGG 243196
Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAG 4937
|| || || || || | |||||||| | ||| || | | ||||| | || ||
Sbjct 243197 AAGCCATAGAAACAGCAGGCTTCTGTAATCTGACTTTTCTGGCTAAATCGCTTCACCAAA 243256
Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997
|||| |||||||| || ||||| ||||||| || |||| ||||| ||| |||| ||
Sbjct 243257 TTTTTATTTACTATGCCATCACTCACTGCAAAGAAAGCCAGAACATAGGATGTAAAATAT 243316
Query 4998 TGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA-ATCAACTTCTTC 5056
|| ||||| || | || |||||| | || || || || ||| || | ||
Sbjct 243317 CTCTCCTCAGGTTTCAAGCCTTCCCAGTGCTGAGTGTCCTT-GTAAAGATCCACCACCTC 243375
Query 5057 AACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAAT 5116
| | |||||| || ||||| ||||| || ||||| |||||||||| | ||||
Sbjct 243376 GGCTGACCAAAAGGAAGCTTCGGCTTTCTTATACATTTGCCAAATATCATAGAATGGAAT 243435
Query 5117 CGGAAGTATGACAAA 5131
|||| ||||||||
Sbjct 243436 AGGAAAGATGACAAA 243450
>seq671
Length=569411
Score = 129 bits (142), Expect = 5e-25
Identities = 161/218 (74%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
||| || || ||||| || ||||| || || | ||||| ||||| |||||| || ||||
Sbjct 254253 AGCCCTTGTGAAAACGGACATTCAGATAGCTCTTCCTTCTGGGTGTTACGGAAGAGTAGC 254312
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
||| | ||||| ||||| | |||||||| || || || || || ||||| ||||||
Sbjct 254313 TCCATGTTCTGGCTTGGCTGCCAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGA 254372
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG-AGAAAAATCATACAGTA 31943
||| || |||||||| ||||| |||| ||||||||||||| | | |||| | |
Sbjct 254373 AGATTACAGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGGCAAAGAAATGTTTGA-AG 254431
Query 31944 TAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981
| |||||||| ||| | | || || || ||||| |||
Sbjct 254432 TCAAAAAGGGTGATCGAATTGCACAGCTTATTTGTGAA 254469
>seq80406
Length=1056
Score = 100 bits (110), Expect = 2e-16
Identities = 91/115 (79%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||| ||||| || || || || |||||||||||||||||||| ||||| || |||
Sbjct 842 TCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 783
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926
|| || || || || || || | ||||||||| || |||||||| | | |||||
Sbjct 782 ATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAACCTGAACTTCTTGGCTAAATC 728
>seq37793
Length=6272
Score = 98.7 bits (108), Expect = 8e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || ||||| || | || ||||| | |||| || ||
Sbjct 4351 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 4410
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| |||
Sbjct 4411 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 4470
Query 4692 AC 4693
||
Sbjct 4471 AC 4472
>seq3013
Length=259453
Score = 98.7 bits (108), Expect = 8e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || ||||| || | || ||||| | |||| || ||
Sbjct 181824 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 181883
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| |||
Sbjct 181884 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 181943
Query 4692 AC 4693
||
Sbjct 181944 AC 181945
>seq120339
Length=683
Score = 95.1 bits (104), Expect = 1e-14
Identities = 93/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990
||| || ||||| ||||| || || ||||||||||||||||| || || || ||||| ||
Sbjct 552 TACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGAT 611
Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050
||| |||| || || | | |||| | |||||||| || | ||| || | |||||||||
Sbjct 612 AAAATACTTCTCATCTGACGTAAGCCTGTTCCAGTGAGGGAGATCCTTTGATAAATCAAC 671
>seq12598
Length=41761
Score = 95.1 bits (104), Expect = 1e-14
Identities = 122/167 (73%), Gaps = 1/167 (1%)
Strand=Plus/Minus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
||| || || ||||| | ||||| || || | ||||| || || | ||| || ||||
Sbjct 9125 AGCCCTTGTGAAAACACACATTCAGATACCTCTTCCTTCTGGTTGTTGTGGAAGAGTAGC 9066
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
||| ||||| ||||| | |||||||| || || || | || ||||| ||||||
Sbjct 9065 TCCACTTTCTGGCTTGGCTGCAAAACACTTCATAGATGTAAGAGCTGGTGTCATAGATGA 9006
Query 31885 AGACT-ATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAA 31930
| | |||||||||| ||||| ||||| ||||||||||||| |||
Sbjct 9005 GTATTTATAGAGGAAATGTTGGCATTGTAGTGTTTAATTTTGGCGAA 8959
>seq10680
Length=70057
Score = 89.7 bits (98), Expect = 4e-13
Identities = 132/185 (71%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 31799 CCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATC 31858
||||| ||||| ||||| || ||||||| | ||||| || || | |||||||| ||
Sbjct 10924 CCTTCTGGGTGTGACGGAAGAGTAGCTCCACGTTCTGGTTTTGCTGCCAAACACTTCATA 10983
Query 31859 GACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTT 31918
|| | || || |||||| |||| ||| || |||||||| ||||| ||| |||||
Sbjct 10984 GATGGAGGAGCTGGTGTTGTAGAGGAAGATTACAGAGGAAATGTTGGTGCTGTACTGTTT 11043
Query 31919 AATTTTGGAGAA--AAATCATACAGTATAAAAAAGGGCGATAGGGTAGCTCAACTAATTT 31976
|||||||| || ||| | || | |||||||| ||| | | || || || ||||
Sbjct 11044 AATTTTGGCAAAGGAAAGTTTGAAG--TCAAAAAGGGTGATCGAATTGCACAGCTTATTT 11101
Query 31977 GCGAA 31981
| |||
Sbjct 11102 GTGAA 11106
>seq18778
Length=15734
Score = 86.0 bits (94), Expect = 5e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || || || ||||| || || |||||||| ||||| |||||||| ||||| ||||||
Sbjct 7876 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 7817
Query 4320 ATAAAATCAAACGGATT 4336
||||||||||| |||||
Sbjct 7816 ATAAAATCAAATGGATT 7800
>seq6551
Length=127649
Score = 82.4 bits (90), Expect = 7e-11
Identities = 110/153 (72%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 31834 TGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAG 31893
||| ||||| | |||| ||| | || || || || ||||| | |||| ||| || ||
Sbjct 107646 TGGTTTGGCTGCAAAACTCTTCACAGATGTAGGCGCTGGTGTCACAGATGAAGATTACAG 107587
Query 31894 AGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTATAAAAAAGGG 31953
|||||| ||||| ||||| ||||||||||||||||| || || | |||||||
Sbjct 107586 AGGAAATGTTGGTATTGTACTGTTTAATTTTGGAGAAGAAAAATTTGAAGTTGAAAAGGG 107527
Query 31954 CGATAGGGTAGCTCAACTAATTTGCGAAAAAAT 31986
||| | | || ||||| ||||| || ||||
Sbjct 107526 TGATGGAATTGCACAACTCATTTGTAAACAAAT 107494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426115289408162
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