Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq260 174 1e-38 seq671 129 5e-25 seq80406 100 2e-16 seq37793 98.7 8e-16 seq3013 98.7 8e-16 seq120339 95.1 1e-14 seq12598 95.1 1e-14 seq10680 89.7 4e-13 seq18778 86.0 5e-12 seq6551 82.4 7e-11 >seq260 Length=805401 Score = 174 bits (192), Expect = 1e-38 Identities = 556/855 (65%), Gaps = 23/855 (3%) Strand=Plus/Plus Query 4287 AAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTG 4346 || ||||| || ||||||| |||||||| |||||||| ||||| ||||||| | | || Sbjct 242609 AAGTTAGTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAAGGGATTAGCTACTCTG 242668 Query 4347 TAATGTTTTTCACACTTTAGAGCTACAAGC---AATCGGTCAGCTACAAATTCTATATAC 4403 || || | | || | | ||| || | || | || | || || || Sbjct 242669 AAAACCTTGCTAAAACCCAG---TTCCAGCCTAAACCTTTCTTCCACGACTTAAATGTAG 242725 Query 4404 TGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAAC 4463 || |||| | | |||| || ||||| | ||||||| | || | | | ||| Sbjct 242726 TGCTTCATTAAGGTGAAGTTCATCCCAATGAGCTTCACAGGCAAGGCCTCCCTAAGGAAC 242785 Query 4464 TCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTA 4523 || |||||||| || | || | || ||||| ||||| | | | | | |||| ||| Sbjct 242786 TCCTGTTCTATCCTTGCAGCATTGGTAATTATTTCTTTCACTCTCTGCTCTGATGTTTTG 242845 Query 4524 TTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA 4583 | || |||| | ||| || || ||| | ||||| ||||| || || ||||||| Sbjct 242846 TGTAGAAAGTGTTTGAACGTTAGGCAGGCACAGTCACAGTGCAAGCCCTCATCTCTGC-- 242903 Query 4584 ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATA 4643 || ||||| || ||||| || | || |||| | |||| || || ||||| ||||| Sbjct 242904 ATAAGTTCATTGGAAAAAGTGAGGCCAGGCACCAGTCCTCATTTCTTGAGCCAGAATATT 242963 Query 4644 GCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC 4703 | ||| | || ||||||||||| || |||| || || ||| | | ||| | | | Sbjct 242964 GATGCAGAAGAACCAGAAAAGAAGATTGCTTCCACTGCAGCAGAGGTTACAATAC---AT 243020 Query 4704 CCGAACGAGCTGGC---TTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTA 4760 | | || | || |||||| |||||| | || | ||| | ||| ||||| Sbjct 243021 TCTACATAGGTAGCCTCTTTGTCCCCAATCCAGTGCAAGGACCAATCTGCTGCCTTCTTG 243080 Query 4761 ACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTTCAAATGGGTCTTGA 4817 | || | || | | || || || || | ||| |||| || ||| || | Sbjct 243081 AAACAAGCCATCATTTCAATGGCATTGAAGAGAAATTCCCTTTCTT----TGGAATTTTA 243136 Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877 || ||| | || || || ||||| |||||||||||| | ||||| || ||||| || Sbjct 243137 ATGTAAATATCAATAAGGCAACTATAGATTTCAGAATGTGTGTTTTCCATGGCAATTTGG 243196 Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAG 4937 || || || || || | |||||||| | ||| || | | ||||| | || || Sbjct 243197 AAGCCATAGAAACAGCAGGCTTCTGTAATCTGACTTTTCTGGCTAAATCGCTTCACCAAA 243256 Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997 |||| |||||||| || ||||| ||||||| || |||| ||||| ||| |||| || Sbjct 243257 TTTTTATTTACTATGCCATCACTCACTGCAAAGAAAGCCAGAACATAGGATGTAAAATAT 243316 Query 4998 TGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA-ATCAACTTCTTC 5056 || ||||| || | || |||||| | || || || || ||| || | || Sbjct 243317 CTCTCCTCAGGTTTCAAGCCTTCCCAGTGCTGAGTGTCCTT-GTAAAGATCCACCACCTC 243375 Query 5057 AACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAAT 5116 | | |||||| || ||||| ||||| || ||||| |||||||||| | |||| Sbjct 243376 GGCTGACCAAAAGGAAGCTTCGGCTTTCTTATACATTTGCCAAATATCATAGAATGGAAT 243435 Query 5117 CGGAAGTATGACAAA 5131 |||| |||||||| Sbjct 243436 AGGAAAGATGACAAA 243450 >seq671 Length=569411 Score = 129 bits (142), Expect = 5e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || || | ||||| ||||| |||||| || |||| Sbjct 254253 AGCCCTTGTGAAAACGGACATTCAGATAGCTCTTCCTTCTGGGTGTTACGGAAGAGTAGC 254312 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | ||||| ||||| | |||||||| || || || || || ||||| |||||| Sbjct 254313 TCCATGTTCTGGCTTGGCTGCCAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGA 254372 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG-AGAAAAATCATACAGTA 31943 ||| || |||||||| ||||| |||| ||||||||||||| | | |||| | | Sbjct 254373 AGATTACAGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGGCAAAGAAATGTTTGA-AG 254431 Query 31944 TAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 | |||||||| ||| | | || || || ||||| ||| Sbjct 254432 TCAAAAAGGGTGATCGAATTGCACAGCTTATTTGTGAA 254469 >seq80406 Length=1056 Score = 100 bits (110), Expect = 2e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| ||||| || || || || |||||||||||||||||||| ||||| || ||| Sbjct 842 TCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 783 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 || || || || || || || | ||||||||| || |||||||| | | ||||| Sbjct 782 ATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAACCTGAACTTCTTGGCTAAATC 728 >seq37793 Length=6272 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | || ||||| | |||| || || Sbjct 4351 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 4410 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| ||| Sbjct 4411 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 4470 Query 4692 AC 4693 || Sbjct 4471 AC 4472 >seq3013 Length=259453 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | || ||||| | |||| || || Sbjct 181824 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 181883 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| ||| Sbjct 181884 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 181943 Query 4692 AC 4693 || Sbjct 181944 AC 181945 >seq120339 Length=683 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| || ||||| ||||| || || ||||||||||||||||| || || || ||||| || Sbjct 552 TACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGAT 611 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||| |||| || || | | |||| | |||||||| || | ||| || | ||||||||| Sbjct 612 AAAATACTTCTCATCTGACGTAAGCCTGTTCCAGTGAGGGAGATCCTTTGATAAATCAAC 671 >seq12598 Length=41761 Score = 95.1 bits (104), Expect = 1e-14 Identities = 122/167 (73%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| | ||||| || || | ||||| || || | ||| || |||| Sbjct 9125 AGCCCTTGTGAAAACACACATTCAGATACCTCTTCCTTCTGGTTGTTGTGGAAGAGTAGC 9066 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| ||||| ||||| | |||||||| || || || | || ||||| |||||| Sbjct 9065 TCCACTTTCTGGCTTGGCTGCAAAACACTTCATAGATGTAAGAGCTGGTGTCATAGATGA 9006 Query 31885 AGACT-ATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAA 31930 | | |||||||||| ||||| ||||| ||||||||||||| ||| Sbjct 9005 GTATTTATAGAGGAAATGTTGGCATTGTAGTGTTTAATTTTGGCGAA 8959 >seq10680 Length=70057 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 31799 CCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATC 31858 ||||| ||||| ||||| || ||||||| | ||||| || || | |||||||| || Sbjct 10924 CCTTCTGGGTGTGACGGAAGAGTAGCTCCACGTTCTGGTTTTGCTGCCAAACACTTCATA 10983 Query 31859 GACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTT 31918 || | || || |||||| |||| ||| || |||||||| ||||| ||| ||||| Sbjct 10984 GATGGAGGAGCTGGTGTTGTAGAGGAAGATTACAGAGGAAATGTTGGTGCTGTACTGTTT 11043 Query 31919 AATTTTGGAGAA--AAATCATACAGTATAAAAAAGGGCGATAGGGTAGCTCAACTAATTT 31976 |||||||| || ||| | || | |||||||| ||| | | || || || |||| Sbjct 11044 AATTTTGGCAAAGGAAAGTTTGAAG--TCAAAAAGGGTGATCGAATTGCACAGCTTATTT 11101 Query 31977 GCGAA 31981 | ||| Sbjct 11102 GTGAA 11106 >seq18778 Length=15734 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 7876 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 7817 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 7816 ATAAAATCAAATGGATT 7800 >seq6551 Length=127649 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 31834 TGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAG 31893 ||| ||||| | |||| ||| | || || || || ||||| | |||| ||| || || Sbjct 107646 TGGTTTGGCTGCAAAACTCTTCACAGATGTAGGCGCTGGTGTCACAGATGAAGATTACAG 107587 Query 31894 AGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTATAAAAAAGGG 31953 |||||| ||||| ||||| ||||||||||||||||| || || | ||||||| Sbjct 107586 AGGAAATGTTGGTATTGTACTGTTTAATTTTGGAGAAGAAAAATTTGAAGTTGAAAAGGG 107527 Query 31954 CGATAGGGTAGCTCAACTAATTTGCGAAAAAAT 31986 ||| | | || ||||| ||||| || |||| Sbjct 107526 TGATGGAATTGCACAACTCATTTGTAAACAAAT 107494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426115289408162