Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq8862 197 1e-45 seq40139 138 8e-28 seq17702 138 8e-28 seq12448 138 8e-28 seq131279 127 2e-24 >seq8862 Length=84653 Score = 197 bits (218), Expect = 1e-45 Identities = 291/410 (71%), Gaps = 2/410 (0%) Strand=Plus/Plus Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164 |||||||| |||| || | || |||||| | |||||| | || | |||| |||||| Sbjct 48720 GGGAAAGGTCCTGGT-TCTCGCTGAAGCTGAATTTTCAGCCGCTCAATGTGAGTCAGGTA 48778 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 | || || ||||||| | || ||||| || || || | || || |||| ||| || Sbjct 48779 AATATGTGCATCTCCCAAATTATGTACAAAGTCACCTGGCTGCAGGCCCGTGA-GTGCGC 48837 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 |||||||||||||| || | ||||||| |||||| || || || || || |||||||| Sbjct 48838 GATCATGTACGTGAGCAGTGCATAGCTGGTGATGTTGAAAGGCACGCCCAGGCCCATGTC 48897 Query 27285 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATAT 27344 || |||||||||| ||||| || || ||||| || | || ||| | ||| || | Sbjct 48898 TCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCACTATGTAGAGCTGGCAGAG 48957 Query 27345 GGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGAT 27404 ||| || |||||||| || ||||| || | ||||| || ||||| || ||| ||| Sbjct 48958 GGCATGACACGGAGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCATACATGAT 49017 Query 27405 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 27464 ||| | ||||| ||||| ||| | ||||| ||| | | ||||||||||| || || Sbjct 49018 GATTCTTCTGTCGTCTGGATTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTAC 49077 Query 27465 CCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAAT 27514 || | || || | ||| |||| || |||| ||||| || |||| Sbjct 49078 TCCTTTACCTGAACAATCTGAATTCATATCTTTGTATTCTGCCCCNAAAT 49127 >seq40139 Length=6180 Score = 138 bits (152), Expect = 8e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||||||| || |||||||||||||| || | |||||||||||||| || || Sbjct 1008 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 949 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || ||||| |||||||| || ||||||||||| ||||| || || ||||| || | Sbjct 948 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 889 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||| ||||||||||| || |||| || Sbjct 888 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAG 845 >seq17702 Length=18075 Score = 138 bits (152), Expect = 8e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||||||| || |||||||||||||| || | |||||||||||||| || || Sbjct 13252 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 13193 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || ||||| |||||||| || ||||||||||| ||||| || || ||||| || | Sbjct 13192 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 13133 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||| ||||||||||| || |||| || Sbjct 13132 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAG 13089 Score = 125 bits (138), Expect = 5e-24 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 |||| || ||||| ||||| || ||||||||||| ||||| || || || || || |||| Sbjct 9630 TCATATCTGTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCGAGGT 9571 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 | || ||| | ||| ||| ||| |||||| |||||||| |||||||||||| | Sbjct 9570 CCCCTTCTACTCTGGTGGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGAACCGTTGGCAT 9511 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||||||| || ||||| ||||| ||||| | |||||||| || Sbjct 9510 CCCAGATCTTCACTCCCTTGGAAGAGAGTTCTTTAGCATTTGTGGATCC 9462 >seq12448 Length=43075 Score = 138 bits (152), Expect = 8e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||||||| || |||||||||||||| || | |||||||||||||| || || Sbjct 9231 AGGCCTGTGACGTGCGCGATCATGTACGTGAGAAGCGCATAGCTGGCGATGTTGAAAGGC 9290 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || ||||| |||||||| || ||||||||||| ||||| || || ||||| |||| Sbjct 9291 ACGCCGAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 9350 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| || || || | ||| ||||||||||| || |||| || Sbjct 9351 ACGTAGAATTGGCAGAGGGCATGGCACGGAGGCAGCACCATCAG 9394 Score = 125 bits (138), Expect = 5e-24 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 |||| || ||||| ||||| || ||||||||||| ||||| || || || || || |||| Sbjct 12945 TCATATCTGTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCGAGGT 13004 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 | || ||| | ||| ||| ||| |||||| |||||||| |||||||||||| | Sbjct 13005 CCCCTTCTACTCTGGTGGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGAACCGTTGGCAT 13064 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||||||| || ||||| ||||| ||||| | |||||||| || Sbjct 13065 CCCAGATCTTCACTCCCTTGGAAGAGAGTTCTTTAGCATTTGTGGATCC 13113 >seq131279 Length=636 Score = 127 bits (140), Expect = 2e-24 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 27538 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 27597 || || ||||| || ||||| ||| ||| ||| ||||||||||||||| ||| Sbjct 1 GGGCCAAGGTCCCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGAA 60 Query 27598 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCT 27657 |||||||| ||||||||||| || ||||| ||||||| ||| | ||||||||| | | Sbjct 61 CCGTTGGCATCCCAGATCTTCACTCCCTTGGAAGAGAGCTTTTTCGTGTTTGTGGATCTT 120 Query 27658 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGG 27717 ||| |||||||||||||| | || | ||||||| || || ||||| || || Sbjct 121 TTGATAAACCACAGCAGCTCTTTCAAAATACCCTTCCAGAACACAGCTTTGGTTGTCAGC 180 Query 27718 AGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCC 27777 ||| |||| | | |||||| ||| ||||| | ||||| |||| | ||| Sbjct 181 AGGTGAAATTCATCTCTGAGGCTGTAGTGCGCCTGCAGGCAGAACACCGACAGGGTGCCC 240 Query 27778 GTGCCCGT 27785 |||||||| Sbjct 241 GTGCCCGT 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368698782217334