Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq633 127 5e-24 seq1029 125 2e-23 seq50868 86.0 1e-11 seq19457 86.0 1e-11 seq5167 84.2 5e-11 >seq633 Length=582679 Score = 127 bits (140), Expect = 5e-24 Identities = 165/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || || || | || |||||||| |||||||||||||| | | ||| Sbjct 204326 CTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTG 204385 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || || || || ||||| |||||||||||||| | | ||| ||| Sbjct 204386 CGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCT 204445 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || || || || || || ||| |||| | | |||| ||| ||| ||||| Sbjct 204446 TCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACTTCC 204502 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| || |||||||||||||| | |||||||| Sbjct 204503 AGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAAATTTGCATTTT 204549 Score = 114 bits (126), Expect = 3e-20 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || |||||||| ||||||||||| || | | ||| | |||||||| || || || Sbjct 204122 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 204181 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| |||||||||||||| | | ||| ||||| || || || || || || Sbjct 204182 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 204241 Query 152028 ACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||| |||| | | |||| ||| ||| ||||| || || || || ||||| || || Sbjct 204242 ACATTCTCGATGGTGTC---ACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGG 204298 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||||||||||| |||||| Sbjct 204299 GTCTTCACGAAGATCTGCAT 204318 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| ||||| || || |||||||| |||||||||||||| | | ||| Sbjct 202796 CCTCAGACGGAGGACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGT 202855 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTC 151990 | |||||||| || || || || ||||| |||||||||||||| Sbjct 202856 GCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTC 202903 >seq1029 Length=469353 Score = 125 bits (138), Expect = 2e-23 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || || || | || |||||||| ||||||||||| || | | || Sbjct 371845 CTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 371904 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || |||||| |||||||| | |||||||||||| | | ||| || Sbjct 371905 CGACCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATCCCC 371964 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 371965 TCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCG 372021 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || ||||||||||||| |||||| Sbjct 372022 AGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 372065 Score = 125 bits (138), Expect = 2e-23 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || || || | || |||||||| ||||||||||| || | | || Sbjct 372073 CTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 372132 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || |||||| |||||||| | |||||||||||| | | ||| || Sbjct 372133 CGACCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCC 372192 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 372193 TCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCG 372249 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || ||||||||||||| |||||| Sbjct 372250 AGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 372293 Score = 125 bits (138), Expect = 2e-23 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || || || | || |||||||| ||||||||||| || | | || Sbjct 372301 CTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 372360 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || |||||| |||||||| | |||||||||||| | | ||| || Sbjct 372361 CGACCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCC 372420 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 372421 TCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCG 372477 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || ||||||||||||| |||||| Sbjct 372478 AGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 372521 Score = 125 bits (138), Expect = 2e-23 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || || || | || |||||||| ||||||||||| || | | || Sbjct 372529 CTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 372588 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || |||||| |||||||| | |||||||||||| | | ||| || Sbjct 372589 CGACCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCC 372648 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 372649 TCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCG 372705 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || ||||||||||||| |||||| Sbjct 372706 AGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 372749 Score = 123 bits (136), Expect = 6e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || || || | || |||||||| ||||||||||| || | | || Sbjct 372757 CTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 372816 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || |||||| |||||||| | |||||||||||| | | ||| || Sbjct 372817 CGACCATCTTCCAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCC 372876 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 372877 TCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCGACCTCG 372933 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || ||||| || || |||||||| |||| ||||||| Sbjct 372934 AGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATT 372978 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || ||||| |||||||| || |||||||| || | | || | |||||| Sbjct 371626 AGGACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGTCCATCT 371685 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||| || ||||| | |||||||||||| | | ||| || ||||| ||| Sbjct 371686 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCT 371745 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||| |||| | | |||| ||| ||| || || || || || Sbjct 371746 TGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATG 371802 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||||| |||||| Sbjct 371803 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 371837 >seq50868 Length=3469 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151898 AAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG 151957 || ||||||||| ||||| || || ||||| || || | ||||| | |||||||| || Sbjct 2102 AACATGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACATCCATCTTCGAG 2043 Query 151958 GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAAT 152017 | || || || ||||| || || ||||| || | | ||||||||||| || || || Sbjct 2042 GTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 1983 Query 152018 TTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCC 152077 || || ||| | |||| | ||||| || |||||||| ||||| | || Sbjct 1982 CTTAGCCTTTACATTTTCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCC 1923 Query 152078 CGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | | || || || | ||| | |||||| || Sbjct 1922 CATAAGGGTTTTTATGAAAATCTGCATCTT 1893 >seq19457 Length=14611 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151898 AAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG 151957 || ||||||||| ||||| || || ||||| || || | ||||| | |||||||| || Sbjct 1945 AACATGAAGAGTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACATCCATCTTCGAG 2004 Query 151958 GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAAT 152017 | || || || ||||| || || ||||| || | | ||||||||||| || || || Sbjct 2005 GTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 2064 Query 152018 TTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCC 152077 || || ||| | |||| | ||||| || |||||||| ||||| | || Sbjct 2065 CTTAGCCTTTACATTTTCTATTGTATCTGAGGGTTCAGACTCAAGAGTGATAGTCCTCCC 2124 Query 152078 CGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | | || || || | ||| | |||||| || Sbjct 2125 CATAAGGGTTTTTATGAAAATCTGCATCTT 2154 >seq5167 Length=254018 Score = 84.2 bits (92), Expect = 5e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||||||||| | ||||| || || ||||| || || | ||||| | Sbjct 220497 AGTCTAAACACAAGATGAAGATTTGACTCCTTCTGAATGTTATAGTCAGACAAAGTACGT 220556 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || |||| || || ||||| || | | ||||||||| Sbjct 220557 CCATCTTCCAGTTGCTTACCAGCAGAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 220616 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| | || | || || |||||||| Sbjct 220617 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTG 220676 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||| | | || || ||||| | |||||| || Sbjct 220677 ATGGTCTTCCCCATAAAGGTTTTTACGAAAATCTGCATCTT 220717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151166985477894