Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq260 156 4e-33 seq1401 120 3e-22 seq80406 91.5 2e-13 >seq260 Length=805401 Score = 156 bits (172), Expect = 4e-33 Identities = 374/562 (67%), Gaps = 9/562 (2%) Strand=Plus/Plus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||| | ||||| || | ||| ||||| || | || | |||||| ||||| || | Sbjct 242870 CAGGCACAGTCACAGTGCAAGCCCTCATCTCTGC--ATAAGTTCATTGGAAAAAGTGAGG 242927 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 || |||| | ||||| ||| || | ||| ||||||| ||| | || || |||||||| Sbjct 242928 CCAGGCACCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAGAAGAACCAGAAAAGAAG 242987 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAA 23688 || | || || || ||| ||| |||| || | || | || || | | || | Sbjct 242988 ATTGCTTCCACTGCAGCAGAGGTTACAATACATTCTACATAGGTAGCCTCTTTGTCCCCA 243047 Query 23689 ATCCAtttttttGTCCAATTAGC---CTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745 ||||| | | ||||| || |||| || | ||| | || ||||||| || Sbjct 243048 ATCCAGTGCAAGGACCAATCTGCTGCCTTC---TTGAAACAAGCCATCATTTCAATGGCA 243104 Query 23746 TTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATAC 23805 || |||||||| |||||| || | | || || ||||||| || ||||||| Sbjct 243105 TTGAAGAGAAATTCCCTTTCTTTGGAATTT-TAATGTAAATATCAATAAGGCAACTATAG 243163 Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865 ||||||||||| | ||||| || ||||| || || ||||| ||||| | ||||| | Sbjct 243164 ATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTA 243223 Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 | ||| | | ||||| || | ||||||| || || || |||||||| | Sbjct 243224 ATCTGACTTTTCTGGCTAAATCGCTTCACCAAATTTTTATTTACTATGCCATCACTCACT 243283 Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAA 23985 ||||||||||| |||||||| | |||||| ||| || |||| | || || ||| Sbjct 243284 GCAAAGAAAGCCAGAACATAGGATGTAAAATATCTCTCCTCAGGTTTCAAGCCTTCCCAG 243343 Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGC 24045 | | | | || || | | ||| || | || ||| |||||| || ||| | Sbjct 243344 TGCTGAGTGTCCTTGTAAAGATCCACCACCTCGGCTGACCAAAAGGAAGCTTCGGCTTTC 243403 Query 24046 TTATACATTAGCCAAATATCAT 24067 ||||||||| |||||||||||| Sbjct 243404 TTATACATTTGCCAAATATCAT 243425 >seq1401 Length=405806 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | |||||| ||||| || | ||||||||| | ||||| || | Sbjct 92090 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGTCCTCTCTTCT 92149 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || |||||||| || |||||||| ||||||| Sbjct 92150 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCAACAGCAGCAAAGG 92209 Query 23651 CCACAA 23656 |||||| Sbjct 92210 CCACAA 92215 >seq80406 Length=1056 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 23762 TTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATAT 23821 |||||| | |||| | || || |||||||| || | |||||||||||||||||| || | Sbjct 853 TTTCTTTAGAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGT 794 Query 23822 TTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 |||| || ||||| || || ||||| ||||| | |||||| Sbjct 793 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTC 754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520317820039600