Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq1215 163 4e-35
seq748 105 1e-17
>seq1215
Length=434531
Score = 163 bits (180), Expect = 4e-35
Identities = 176/232 (76%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 9256 GTCTGGAACAG---TTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCAC 9312
|||||||||| || ||||| |||||||||||| || |||| || ||||| |||
Sbjct 118811 GTCTGGAACAACCTTTCATCGTC---CCATTCTGGATGCTCCCGTTTAAGCACATCACAC 118867
Query 9313 ACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCA 9372
|| ||||||||||||| |||||||| ||||| ||||||||||| ||||| ||||| |||
Sbjct 118868 ACTCTGTTGTGTTCCCGCAGCCAGATGGTGGCATACATCATGAGACCAGGCACCAGACCA 118927
Query 9373 AAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATG 9432
|| |||| || || ||||| | |||| || ||| || || | || |||||||||||
Sbjct 118928 AAGACCTCCTGTCCCACAGCAAACCGCAGGTGTTCAGGGACGTTAGGGGGATAGATCATC 118987
Query 9433 TGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
| ||||| |||||||| | ||| || || | || || ||||| ||||
Sbjct 118988 TCTACCTGAGTATCTTTGACTGTGGGAGGGTATACCTCTCCATCAATTATCT 119039
Score = 134 bits (148), Expect = 2e-26
Identities = 202/287 (70%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359
|| ||||| |||| || || | |||| ||||||||||| | || | |||| ||||
Sbjct 116318 AAGGGACAGTCCTTTACATTATTGCAGATGAGAGACTGAATGGAGGCTGTGTTGATGATC 116377
Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419
|| || || ||||| || |||||||| ||||||||||| | || || || ||
Sbjct 116378 TTAAAACCTACTTCTCCACCAAAGGTGCTCGGCTTCCAGTAGTCAGGAGAACATATAGGA 116437
Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479
|| |||| || ||||| | |||||| || || || | || | ||| ||||||| |||
Sbjct 116438 TTTCCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCACCAAAG 116497
Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539
||||| | || || ||||| || |||| | | | ||||||||||| ||| |||| |
Sbjct 116498 ATGGCATCTGGGCGAGGCTTCTCTACCAGCAGGGCAGGGTACAGCTCCATAGCATCGATG 116557
Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586
|| || || | || | || ||||| || ||||| ||||||||
Sbjct 116558 TCACCATAGACTGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCTGT 116604
Score = 127 bits (140), Expect = 3e-24
Identities = 135/178 (76%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709
||||||||||| ||||| ||||| ||||| || || ||||| ||| ||| | |||
Sbjct 121191 CTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGTCCTCGATGATGATCTGTCTTGAAA 121250
Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769
||||| || |||||||||||| |||| || |||||||| | || ||||||||||||||
Sbjct 121251 AACTGATGAGTGAAATGTTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATCA 121310
Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCT 9827
|| | || | || | |||||| |||||||||||| | | || ||| || ||||
Sbjct 121311 GGGATAAACTTTCTTCTTAGAAGAAATTTTTCCACAACCTCTTTCGAATCAGGAAGCT 121368
Score = 96.9 bits (106), Expect = 5e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
|||||||| || || | ||||| || || || | || || ||||| || | || | |
Sbjct 121867 TCACCTTTCACACCCATGGGAGTCGGGCAGTCATCAGCCACAGGAGGAAGGACTCTGGTG 121926
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
|||||||||||||| ||||| |||||||||||| ||| | |||| | | ||||| |
Sbjct 121927 TAATAGGAGAGATTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTGCACATTGTAAGTT 121986
Query 10028 GGAGGGCTGTCAATCAAATCGGATCT 10053
|| || || |||||||||| |||||
Sbjct 121987 GGTGGACTCTCAATCAAATGTGATCT 122012
>seq748
Length=543513
Score = 105 bits (116), Expect = 1e-17
Identities = 165/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
||||||| | ||| |||| || || || || ||||| |||||||||||| | || |
Sbjct 491215 TCTTGACAAGATTGAAGCCCATCTCGCCACCAAATGTGCTTGGCTTCCAGTACTCTGGAG 491156
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
| |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || |
Sbjct 491155 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAATGGAGCCCCAATCTCTATCATAC 491096
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
|||| || ||||||| ||| || || |||||| | || | || | | | | |||||
Sbjct 491095 TCTCCCCAAAGATGGAGTTTGGTAGGCACTTTTCAAGCAGCAGCCCAGGGAAGAACTCCA 491036
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584
|| || | |||||| || | | | || ||||| |||||||| ||||||
Sbjct 491035 AGGCATCAATGTCTCCATATAACTCTTCCAACTCAGCAGCCATCTCCTTCTCTCCT 490980
Score = 96.9 bits (106), Expect = 5e-15
Identities = 107/141 (76%), Gaps = 4/141 (3%)
Strand=Plus/Minus
Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 9704
|| || || ||||| |||| | || |||||| | ||||| || |||| | |||
Sbjct 480275 GTACTCACTCCATGGCCCAAGGCCTTGGTGAAGCCAGGGCCCATCTTGCCAGA--AGTTT 480218
Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764
| || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||||||||
Sbjct 480217 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCCTGGG 480158
Query 9765 GATCGGGAGTGAAGGTCCTCC 9785
|||| || |||| ||||||
Sbjct 480157 GATCAGGTATGAACTTCCTCC 480137
Score = 89.7 bits (98), Expect = 7e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
||||||| | ||| |||| || || || || ||||| |||||||||||| | || |
Sbjct 491366 TCTTGACAAGATTGAATCCCATCTCGCCACCAAATGTGCTTGGCTTCCAGTACTCTGGAG 491307
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
| |||||| |||| | | ||| || |||||||| || |||||||| | ||| | || |
Sbjct 491306 AACAGATGGGGTTCCCTAGGAGACCCTTGAGGGAAAATGGAGCCCCAATCTCTATCATAC 491247
Query 8469 TCTCACCGAAGATG 8482
|||| || ||||||
Sbjct 491246 TCTCCCCAAAGATG 491233
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 715268182226560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |