Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1215 163 4e-35 seq748 105 1e-17 >seq1215 Length=434531 Score = 163 bits (180), Expect = 4e-35 Identities = 176/232 (76%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 9256 GTCTGGAACAG---TTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCAC 9312 |||||||||| || ||||| |||||||||||| || |||| || ||||| ||| Sbjct 118811 GTCTGGAACAACCTTTCATCGTC---CCATTCTGGATGCTCCCGTTTAAGCACATCACAC 118867 Query 9313 ACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCA 9372 || ||||||||||||| |||||||| ||||| ||||||||||| ||||| ||||| ||| Sbjct 118868 ACTCTGTTGTGTTCCCGCAGCCAGATGGTGGCATACATCATGAGACCAGGCACCAGACCA 118927 Query 9373 AAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATG 9432 || |||| || || ||||| | |||| || ||| || || | || ||||||||||| Sbjct 118928 AAGACCTCCTGTCCCACAGCAAACCGCAGGTGTTCAGGGACGTTAGGGGGATAGATCATC 118987 Query 9433 TGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 | ||||| |||||||| | ||| || || | || || ||||| |||| Sbjct 118988 TCTACCTGAGTATCTTTGACTGTGGGAGGGTATACCTCTCCATCAATTATCT 119039 Score = 134 bits (148), Expect = 2e-26 Identities = 202/287 (70%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| |||| || || | |||| ||||||||||| | || | |||| |||| Sbjct 116318 AAGGGACAGTCCTTTACATTATTGCAGATGAGAGACTGAATGGAGGCTGTGTTGATGATC 116377 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || || || ||||| || |||||||| ||||||||||| | || || || || Sbjct 116378 TTAAAACCTACTTCTCCACCAAAGGTGCTCGGCTTCCAGTAGTCAGGAGAACATATAGGA 116437 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | || | ||| ||||||| ||| Sbjct 116438 TTTCCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCACCAAAG 116497 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 ||||| | || || ||||| || |||| | | | ||||||||||| ||| |||| | Sbjct 116498 ATGGCATCTGGGCGAGGCTTCTCTACCAGCAGGGCAGGGTACAGCTCCATAGCATCGATG 116557 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || || || | || | || ||||| || ||||| |||||||| Sbjct 116558 TCACCATAGACTGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCTGT 116604 Score = 127 bits (140), Expect = 3e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| ||||| ||||| ||||| || || ||||| ||| ||| | ||| Sbjct 121191 CTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGTCCTCGATGATGATCTGTCTTGAAA 121250 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 ||||| || |||||||||||| |||| || |||||||| | || |||||||||||||| Sbjct 121251 AACTGATGAGTGAAATGTTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATCA 121310 Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCT 9827 || | || | || | |||||| |||||||||||| | | || ||| || |||| Sbjct 121311 GGGATAAACTTTCTTCTTAGAAGAAATTTTTCCACAACCTCTTTCGAATCAGGAAGCT 121368 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | ||||| || || || | || || ||||| || | || | | Sbjct 121867 TCACCTTTCACACCCATGGGAGTCGGGCAGTCATCAGCCACAGGAGGAAGGACTCTGGTG 121926 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||||||||| ||||| |||||||||||| ||| | |||| | | ||||| | Sbjct 121927 TAATAGGAGAGATTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTGCACATTGTAAGTT 121986 Query 10028 GGAGGGCTGTCAATCAAATCGGATCT 10053 || || || |||||||||| ||||| Sbjct 121987 GGTGGACTCTCAATCAAATGTGATCT 122012 >seq748 Length=543513 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| | ||| |||| || || || || ||||| |||||||||||| | || | Sbjct 491215 TCTTGACAAGATTGAAGCCCATCTCGCCACCAAATGTGCTTGGCTTCCAGTACTCTGGAG 491156 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || | Sbjct 491155 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAATGGAGCCCCAATCTCTATCATAC 491096 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||||| ||| || || |||||| | || | || | | | | ||||| Sbjct 491095 TCTCCCCAAAGATGGAGTTTGGTAGGCACTTTTCAAGCAGCAGCCCAGGGAAGAACTCCA 491036 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || | |||||| || | | | || ||||| |||||||| |||||| Sbjct 491035 AGGCATCAATGTCTCCATATAACTCTTCCAACTCAGCAGCCATCTCCTTCTCTCCT 490980 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/141 (76%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 9704 || || || ||||| |||| | || |||||| | ||||| || |||| | ||| Sbjct 480275 GTACTCACTCCATGGCCCAAGGCCTTGGTGAAGCCAGGGCCCATCTTGCCAGA--AGTTT 480218 Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764 | || |||||||| ||||| ||||| |||| ||||||||||| | |||||||||||||| Sbjct 480217 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCCTGGG 480158 Query 9765 GATCGGGAGTGAAGGTCCTCC 9785 |||| || |||| |||||| Sbjct 480157 GATCAGGTATGAACTTCCTCC 480137 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| | ||| |||| || || || || ||||| |||||||||||| | || | Sbjct 491366 TCTTGACAAGATTGAATCCCATCTCGCCACCAAATGTGCTTGGCTTCCAGTACTCTGGAG 491307 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| |||| | | ||| || |||||||| || |||||||| | ||| | || | Sbjct 491306 AACAGATGGGGTTCCCTAGGAGACCCTTGAGGGAAAATGGAGCCCCAATCTCTATCATAC 491247 Query 8469 TCTCACCGAAGATG 8482 |||| || |||||| Sbjct 491246 TCTCCCCAAAGATG 491233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715268182226560