Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05]
179,514 sequences; 3,187,660,572 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq633 165 2e-35
seq1029 136 9e-27
seq50868 116 9e-21
seq19457 116 9e-21
seq2202 87.8 4e-12
>seq633
Length=582679
Score = 165 bits (182), Expect = 2e-35
Identities = 179/235 (76%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| ||||||| ||||||||||||| ||||| || || || || |||||||| || |
Sbjct 204554 AGGTCAAAATGC---AAATTTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTGGAAG 204498
Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027
|||| || ||| ||||||||||||| || || ||||| ||||| |||||||| ||
Sbjct 204497 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCAT 204440
Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087
||| || |||||||| | || ||||| || || || ||||| |||||||| | |||||
Sbjct 204439 CCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 204380
Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
| | ||||| ||| |||| ||||| || || |||| || || | | ||||||
Sbjct 204379 TTCTGATTACAACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGA 204325
Score = 136 bits (150), Expect = 9e-27
Identities = 149/196 (76%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||| || ||||| || |||
Sbjct 204315 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGA--GCCCAGTG 204258
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| || || ||||| ||||| |||||||| ||||| || |||||||
Sbjct 204257 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCAGC 204198
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| |||||||| | |||||| | || || |||
Sbjct 204197 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACA 204138
Query 178102 TCCAAAAAGAATCAAC 178117
|||| ||||| || ||
Sbjct 204137 TCCAGAAAGAGTCCAC 204122
>seq1029
Length=469353
Score = 136 bits (150), Expect = 9e-27
Identities = 164/221 (74%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||||||||| || || |||
Sbjct 372062 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGA--GCCCAGTG 372005
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||||||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 372004 ACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCTGACCAGC 371945
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | |||||||| || |||||||| |||||||| | || || | || || |||
Sbjct 371944 AGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACA 371885
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| ||||| || || |||| || || | | ||||||
Sbjct 371884 TCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGA 371844
Score = 136 bits (150), Expect = 9e-27
Identities = 164/221 (74%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||||||||| || || |||
Sbjct 372290 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGA--GCCCAGTG 372233
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||||||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 372232 ACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 372173
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | |||||||| || |||||||| |||||||| | || || | || || |||
Sbjct 372172 AGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACA 372113
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| ||||| || || |||| || || | | ||||||
Sbjct 372112 TCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGA 372072
Score = 136 bits (150), Expect = 9e-27
Identities = 164/221 (74%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||||||||| || || |||
Sbjct 372518 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGA--GCCCAGTG 372461
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||||||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 372460 ACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 372401
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | |||||||| || |||||||| |||||||| | || || | || || |||
Sbjct 372400 AGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACA 372341
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| ||||| || || |||| || || | | ||||||
Sbjct 372340 TCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGA 372300
Score = 136 bits (150), Expect = 9e-27
Identities = 164/221 (74%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||||||||| || || |||
Sbjct 372746 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGA--GCCCAGTG 372689
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||||||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 372688 ACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 372629
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | |||||||| || |||||||| |||||||| | || || | || || |||
Sbjct 372628 AGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACA 372569
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| ||||| || || |||| || || | | ||||||
Sbjct 372568 TCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGA 372528
Score = 136 bits (150), Expect = 9e-27
Identities = 164/221 (74%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || || || || || || |||||||||||||| || || |||
Sbjct 372974 CAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGA--GCCCAGTG 372917
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 372916 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 372857
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | |||||||| || |||||||| |||||||| | || || | || || |||
Sbjct 372856 AGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACA 372797
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| ||||| || || |||| || || | | ||||||
Sbjct 372796 TCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGA 372756
Score = 134 bits (148), Expect = 3e-26
Identities = 156/207 (75%), Gaps = 5/207 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||||||||| || || |||
Sbjct 371834 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGA--GCCCAGTG 371777
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||||||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 371776 ACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCTGACCAGC 371717
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| || || |||||||| ||||||||| | || || | || || |||
Sbjct 371716 AGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAACA 371657
Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128
| || ||||| || || ||||| ||||
Sbjct 371656 TTCAGAAAGAGTCCACTCTGCA-CTTG 371631
>seq50868
Length=3469
Score = 116 bits (128), Expect = 9e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||| | ||||| || | || | || ||||| || ||| ||| ||||||
Sbjct 1899 CAGATTTTCATAAAAACCCTTATGGGGAGGACTATCACTCTTGAGTCTGAACCCTCAGAT 1958
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||| ||||| || |||||||| ||||| || ||||||
Sbjct 1959 ACAATAGAAAATGTAAAGGCTAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 2018
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || || || |||||||||||| | ||| | | || |||||| |
Sbjct 2019 AGACTGATCTTTGCTGGTAAGCACCTCGAAGATGGATGTACTTTGTCTGACTATAACATT 2078
Query 178104 CAAAAAGAATCAACACTGCATCTT 178127
|| || || ||||| || ||| ||
Sbjct 2079 CAGAAGGAGTCAACTCTTCATGTT 2102
>seq19457
Length=14611
Score = 116 bits (128), Expect = 9e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||| | ||||| || | || | || ||||| || ||| ||| ||||||
Sbjct 2148 CAGATTTTCATAAAAACCCTTATGGGGAGGACTATCACTCTTGAGTCTGAACCCTCAGAT 2089
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||| ||||| || |||||||| ||||| || ||||||
Sbjct 2088 ACAATAGAAAATGTAAAGGCTAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 2029
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || || || |||||||||||| | ||| | | || |||||| |
Sbjct 2028 AGACTGATCTTTGCTGGTAAGCACCTCGAAGATGGATGTACTTTGTCTGACTATAACATT 1969
Query 178104 CAAAAAGAATCAACACTGCATCTT 178127
|| || || ||||| || ||| ||
Sbjct 1968 CAGAAGGAGTCAACTCTTCATGTT 1945
>seq2202
Length=316707
Score = 87.8 bits (96), Expect = 4e-12
Identities = 157/224 (70%), Gaps = 13/224 (6%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| ||||||| | | ||| |||||| || | || || || || | ||| ||||
Sbjct 228892 AGGTCAAAATGCC---AGTCTTCATGAAAATCCTTCCTGGGAAGACCATTATCCTTGAGG 228836
Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAA- 178026
|||| || ||| |||||||| |||| || || |||||| ||| | ||||||||||
Sbjct 228835 TGGA--GCCCAGTGACACCATCAAGAATGTGAAGGCAAAGATCCAGAATAAAGAAGGAAT 228778
Query 178027 -TCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085
||||| | |||||||| | || |||| | | || ||||| ||| ||| | |||
Sbjct 228777 GTCCCT-CTAACCAGCAAAGGCTCATCTCTGTAGACAAGCAGCTGGAATATGTCTGAACT 228719
Query 178086 CTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
||| | || | || || | ||||| ||||| ||||| || ||
Sbjct 228718 CTTTCTGACT---ACATCAAGAAAGAGTCAACCCTGCACCTGGT 228678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1200962590403716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |