Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq633 165 2e-35 seq1029 136 9e-27 seq50868 116 9e-21 seq19457 116 9e-21 seq2202 87.8 4e-12 >seq633 Length=582679 Score = 165 bits (182), Expect = 2e-35 Identities = 179/235 (76%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| ||||||||||||| ||||| || || || || |||||||| || | Sbjct 204554 AGGTCAAAATGC---AAATTTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTGGAAG 204498 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||||||||| || || ||||| ||||| |||||||| || Sbjct 204497 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCAT 204440 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| || || || ||||| |||||||| | ||||| Sbjct 204439 CCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 204380 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | | ||||| ||| |||| ||||| || || |||| || || | | |||||| Sbjct 204379 TTCTGATTACAACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGA 204325 Score = 136 bits (150), Expect = 9e-27 Identities = 149/196 (76%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| || ||||| || ||| Sbjct 204315 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGA--GCCCAGTG 204258 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| ||||| |||||||| ||||| || ||||||| Sbjct 204257 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCAGC 204198 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | || || ||| Sbjct 204197 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACA 204138 Query 178102 TCCAAAAAGAATCAAC 178117 |||| ||||| || || Sbjct 204137 TCCAGAAAGAGTCCAC 204122 >seq1029 Length=469353 Score = 136 bits (150), Expect = 9e-27 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||||||||| || || ||| Sbjct 372062 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGA--GCCCAGTG 372005 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 372004 ACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCTGACCAGC 371945 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| || |||||||| |||||||| | || || | || || ||| Sbjct 371944 AGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACA 371885 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || |||| || || | | |||||| Sbjct 371884 TCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGA 371844 Score = 136 bits (150), Expect = 9e-27 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||||||||| || || ||| Sbjct 372290 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGA--GCCCAGTG 372233 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 372232 ACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 372173 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| || |||||||| |||||||| | || || | || || ||| Sbjct 372172 AGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACA 372113 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || |||| || || | | |||||| Sbjct 372112 TCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGA 372072 Score = 136 bits (150), Expect = 9e-27 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||||||||| || || ||| Sbjct 372518 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGA--GCCCAGTG 372461 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 372460 ACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 372401 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| || |||||||| |||||||| | || || | || || ||| Sbjct 372400 AGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACA 372341 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || |||| || || | | |||||| Sbjct 372340 TCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGA 372300 Score = 136 bits (150), Expect = 9e-27 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||||||||| || || ||| Sbjct 372746 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGA--GCCCAGTG 372689 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 372688 ACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 372629 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| || |||||||| |||||||| | || || | || || ||| Sbjct 372628 AGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACA 372569 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || |||| || || | | |||||| Sbjct 372568 TCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGA 372528 Score = 136 bits (150), Expect = 9e-27 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||||||||| || || ||| Sbjct 372974 CAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGA--GCCCAGTG 372917 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 372916 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 372857 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| || |||||||| |||||||| | || || | || || ||| Sbjct 372856 AGAGGTTGATCTTCGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACA 372797 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || |||| || || | | |||||| Sbjct 372796 TCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGA 372756 Score = 134 bits (148), Expect = 3e-26 Identities = 156/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||||||||| || || ||| Sbjct 371834 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGA--GCCCAGTG 371777 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 371776 ACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCTGACCAGC 371717 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || |||||||| ||||||||| | || || | || || ||| Sbjct 371716 AGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAACA 371657 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||||| || || ||||| |||| Sbjct 371656 TTCAGAAAGAGTCCACTCTGCA-CTTG 371631 >seq50868 Length=3469 Score = 116 bits (128), Expect = 9e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||| | ||||| || | || | || ||||| || ||| ||| |||||| Sbjct 1899 CAGATTTTCATAAAAACCCTTATGGGGAGGACTATCACTCTTGAGTCTGAACCCTCAGAT 1958 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || |||||||| ||||| || |||||| Sbjct 1959 ACAATAGAAAATGTAAAGGCTAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 2018 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || |||||||||||| | ||| | | || |||||| | Sbjct 2019 AGACTGATCTTTGCTGGTAAGCACCTCGAAGATGGATGTACTTTGTCTGACTATAACATT 2078 Query 178104 CAAAAAGAATCAACACTGCATCTT 178127 || || || ||||| || ||| || Sbjct 2079 CAGAAGGAGTCAACTCTTCATGTT 2102 >seq19457 Length=14611 Score = 116 bits (128), Expect = 9e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||| | ||||| || | || | || ||||| || ||| ||| |||||| Sbjct 2148 CAGATTTTCATAAAAACCCTTATGGGGAGGACTATCACTCTTGAGTCTGAACCCTCAGAT 2089 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || |||||||| ||||| || |||||| Sbjct 2088 ACAATAGAAAATGTAAAGGCTAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 2029 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || |||||||||||| | ||| | | || |||||| | Sbjct 2028 AGACTGATCTTTGCTGGTAAGCACCTCGAAGATGGATGTACTTTGTCTGACTATAACATT 1969 Query 178104 CAAAAAGAATCAACACTGCATCTT 178127 || || || ||||| || ||| || Sbjct 1968 CAGAAGGAGTCAACTCTTCATGTT 1945 >seq2202 Length=316707 Score = 87.8 bits (96), Expect = 4e-12 Identities = 157/224 (70%), Gaps = 13/224 (6%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | | ||| |||||| || | || || || || | ||| |||| Sbjct 228892 AGGTCAAAATGCC---AGTCTTCATGAAAATCCTTCCTGGGAAGACCATTATCCTTGAGG 228836 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAA- 178026 |||| || ||| |||||||| |||| || || |||||| ||| | |||||||||| Sbjct 228835 TGGA--GCCCAGTGACACCATCAAGAATGTGAAGGCAAAGATCCAGAATAAAGAAGGAAT 228778 Query 178027 -TCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 ||||| | |||||||| | || |||| | | || ||||| ||| ||| | ||| Sbjct 228777 GTCCCT-CTAACCAGCAAAGGCTCATCTCTGTAGACAAGCAGCTGGAATATGTCTGAACT 228719 Query 178086 CTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| | || | || || | ||||| ||||| ||||| || || Sbjct 228718 CTTTCTGACT---ACATCAAGAAAGAGTCAACCCTGCACCTGGT 228678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200962590403716