Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galeopterus_20variegatus_20[refseq_20GCF_5F000696425.1_202014-06-05] 179,514 sequences; 3,187,660,572 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq633 111 1e-19 seq1029 104 2e-17 >seq633 Length=582679 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| |||| ||| ||| ||||| ||||| || || || || ||||| Sbjct 204329 AGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 204388 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | ||| | || || Sbjct 204389 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCT 204448 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | ||||| || | |||||| |||| || Sbjct 204449 TTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTG 204508 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| |||||||| ||||| || Sbjct 204509 ATGGTCTTGCCGGTCAGAGTCTTCACGAAAATTTGCATTTT 204549 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||| ||||| ||||| || || ||||| | || || ||||||||||| || || Sbjct 204127 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 204186 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || | ||| ||||| | ||| | || || || ||| ||| || ||||| Sbjct 204187 GATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 204246 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||| || | |||||| |||| || || || || || ||||| ||||| || Sbjct 204247 CTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 204306 Query 41851 GAAAATCTGCAT 41862 ||| |||||||| Sbjct 204307 GAAGATCTGCAT 204318 >seq1029 Length=469353 Score = 104 bits (114), Expect = 2e-17 Identities = 152/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| ||| ||||||||||| ||||| || |||||||| | || || Sbjct 371629 ACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 371688 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || || || || |||| | ||| ||||| | ||| | | ||||||||| | Sbjct 371689 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGGATCCCCTCCTTGTCTTGG 371748 Query 41774 ATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || || ||| |||| | || ||||| || | ||| ||||| | || || || Sbjct 371749 ATCTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 371804 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| ||||| ||||| |||||||| Sbjct 371805 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 371837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461266624496800