Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq931 262 4e-65 seq39 105 7e-18 >seq931 Length=156331669 Score = 262 bits (290), Expect = 4e-65 Identities = 520/764 (68%), Gaps = 7/764 (1%) Strand=Plus/Plus Query 16778 CCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAG 16837 |||||||| || | ||| || || ||||| || || ||||| ||||| ||| Sbjct 44830123 CCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAA 44830182 Query 16838 TTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACC 16897 ||||| || || || || || | || || || | ||| ||| ||||| ||| Sbjct 44830183 TTCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACA 44830242 Query 16898 GCTTCCTTAATAATA-CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAA 16956 || | |||| || || || || ||||| || ||| | ||| || ||||| || Sbjct 44830243 GCATTGATAATTATTTCTCTCA-CTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAA 44830301 Query 16957 CATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAA 17016 ||||| || || ||||| || ||||| ||||| |||||||| |||||||| || ||||| Sbjct 44830302 CATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAA 44830361 Query 17017 TGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGA 17076 || | || |||||| |||||||||||| | ||| ||||||| || || || ||||| Sbjct 44830362 CGTGAGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGA 44830421 Query 17077 AAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTT 17136 |||||| || || || || | || || || | | |||| | || || || ||||| Sbjct 44830422 AAAGAAGATGCCTTCTACTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTT 44830481 Query 17137 GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTAT 17196 || | |||||| | |||| || || || | ||| | ||| ||||| ||| || Sbjct 44830482 GTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAAT 44830540 Query 17197 GGCCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||| || | | || ||| | |||| | || || | || || || || || || || Sbjct 44830541 GGCATTGAAGAGAAATTCCC--TTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGA 44830598 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 || |||||||| || |||||||| |||||||| || || || || || || || |||||| Sbjct 44830599 CTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCT 44830658 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | || |||||| | ||||| ||| | | |||||| || || ||||| || Sbjct 44830659 TCTGTAATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCA 44830718 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || || || || ||| | ||| || |||||| | || || || | || Sbjct 44830719 CTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGGGT 44830778 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 ||||| | | || ||||| | ||||| || |||| |||||| || |||| | Sbjct 44830779 TCCCAGTGCCGAATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCC 44830838 Query 17495 GCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||| |||||||| | ||| ||||||| ||| | |||||||| Sbjct 44830839 GCCTTCTTATACATCTGCCAGATATCATGGTACTCGATGGGGAA 44830882 Score = 127 bits (140), Expect = 2e-24 Identities = 374/570 (66%), Gaps = 11/570 (2%) Strand=Plus/Minus Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 |||| || || || | || ||||| ||||| || ||||| |||||||| || ||||||| Sbjct 144506201 TCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATG 144506142 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || |||||| |||| ||||||| | ||| |||||| || || || ||||||| Sbjct 144506141 TGAGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAA 144506082 Query 17079 AGAATATACCCTCGACGGATGCAAACGC--GAT--TAATCGTTCGGCGTACGTCGCGTCT 17134 |||| | | || | ||||| || || | ||||| | | || |||| Sbjct 144506081 AGAAGGTGCTTTCCGCCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAATGTCT 144506022 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| | |||||| | ||||| | || || | ||| | | | ||||||||| Sbjct 144506021 TTGTTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCA 144505963 Query 17195 ATGGC-CTTAA-ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 ||||| || || | || ||| |||| | | | | || ||| || || || || | Sbjct 144505962 ATGGCACTGAAGAGAAATTCCCTTTCT----TTGTTATCTTTAATATGTGTCAATAAGGA 144505907 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | | | ||||| || | |||||| || || || || || || || || ||||| || Sbjct 144505906 GATTATTTATTTCAGAATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGG 144505847 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372 ||| | || |||||||| ||| ||||| | | ||||| | | || || | Sbjct 144505846 TTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCAT 144505787 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432 | | || ||||| || |||| ||||| || |||||| ||| || || | || Sbjct 144505786 CACATGCTGCGAAGAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGG 144505727 Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 | ||||| | | || ||||| | ||||| || | || |||| ||| | || Sbjct 144505726 CTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCT 144505667 Query 17493 CTGCCTTTTTATACATATTCCAAATATCAT 17522 || | || || ||||| ||||||||||||| Sbjct 144505666 CTACTTTCTTTTACATTTTCCAAATATCAT 144505637 >seq39 Length=107640188 Score = 105 bits (116), Expect = 7e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| ||||||||||| | ||||||||| ||||||||||| Sbjct 97368599 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 97368658 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || || |||||||| || || || || | ||||| | Sbjct 97368659 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 97368718 Query 17106 C 17106 | Sbjct 97368719 C 97368719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517282227513480