Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq931 253 2e-62 seq377 102 8e-17 seq39 93.3 4e-14 >seq931 Length=156331669 Score = 253 bits (280), Expect = 2e-62 Identities = 575/854 (67%), Gaps = 18/854 (2%) Strand=Plus/Plus Query 15935 TCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA-GGGATTAGT 15993 || ||||||||||| |||| | || ||||| ||| |||| ||||| ||| | | Sbjct 44830047 TCAAAGAAGTTAGTCTTTCAGT-----GAAATATTCTCCGTAAAGTCAAATGGGCTCTCT 44830101 Query 15994 AGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTAT 16053 | || || | ||| | ||||||||| | | ||| ||||| ||||| || || Sbjct 44830102 A-CTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAAT 44830160 Query 16054 ATATTGACACATTA-AGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTA 16112 ||||| ||||| ||| |||||| || || || || || || | || | || | Sbjct 44830161 GTATTGCTTCATTAGAGT-GCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGA 44830219 Query 16113 AAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACG 16172 |||| |||||||||| ||| || | |||| || || | || || || | Sbjct 44830220 GGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTCTCTCACTTTCTCCTCCGATG 44830279 Query 16173 GTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTC 16232 || | || |||||||| ||||| | || || || || || |||| || || |||| Sbjct 44830280 GTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTC 44830339 Query 16233 TGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGA 16292 |||| |||||||| |||||||| || | || ||||| |||||||||||| | ||||| Sbjct 44830340 TGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGA 44830399 Query 16293 ATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATC 16352 |||||| ||||| || || |||||||| || || || || | || || || | | Sbjct 44830400 ATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCGAAGGCTACAACAT 44830459 Query 16353 GTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTT 16412 |||| | || ||||| ||||| | | |||||| | |||| || || || | | Sbjct 44830460 GTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCT 44830519 Query 16413 TTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGAT 16470 | | |||| ||||| ||| ||||| || | | || ||| | |||| | | ||| | Sbjct 44830520 TGACACAAGGCATCG-TTCAATGGCATTGAAGAGAAATTCCC--TTTCTTTGAGATCTTT 44830576 Query 16471 TATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTG 16530 || || || ||||| || | ||| |||||||| || |||||||| || ||||| || || Sbjct 44830577 GATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 44830636 Query 16531 AAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAG 16590 || |||||||| || || || || | || || ||| | |||||| ||| ||| Sbjct 44830637 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGGCTAAATCGCTCCACCAA 44830696 Query 16591 GTTCTCATTCACGATACCGTCACTTGCAGCAA--AAAACGCCAATATGTGCTTAATGAAA 16648 || ||||| || || || |||||||| |||| ||||| || ||| | | || ||| Sbjct 44830697 ATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACATGGGAT--ATAAAA 44830754 Query 16649 TATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCT 16708 ||| | || || | | || | ||| | | || ||||| | ||||| || Sbjct 44830755 TATCTCTCCTCGGGCTTCAGGGGTTCCCAGTGCCGAATGTCCTTGGACAGGTCCACCTCC 44830814 Query 16709 TCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGT 16768 || | ||||| ||| |||| | ||||| |||||||| | ||| ||||||| ||| | Sbjct 44830815 TCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTCG 44830874 Query 16769 ATGGGAAATACGAC 16782 ||||| || | ||| Sbjct 44830875 ATGGGGAAGATGAC 44830888 >seq377 Length=146757320 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | |||||||| |||| |||| Sbjct 103162975 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 103163034 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| | || || |||| ||||| | Sbjct 103163035 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 103163094 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 103163095 CCACCACTCTTTCC 103163108 >seq39 Length=107640188 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| || ||||| || | || ||||| |||||||||||| Sbjct 97368601 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 97368660 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 97368661 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGC 97368719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511154147604520