Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq168 493 9e-135
seq39 412 2e-110
seq235 315 5e-81
seq219 147 2e-30
seq848 82.4 6e-11
>seq168
Length=201391403
Score = 493 bits (546), Expect = 9e-135
Identities = 449/566 (79%), Gaps = 10/566 (2%)
Strand=Plus/Plus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014
|||| || || ||||||| ||||||||||||| |||||||||||||||| || ||||
Sbjct 95259748 AAAACACCTTCATATTAATCATTCTTCTCATATGCTTCAAATTTGTACTTGATGTGTTTC 95259807
Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074
| || || |||| ||| ||||||| ||| ||||| || |||||| |||||||| |
Sbjct 95259808 CCCTCCTGGACATCAGAGAGAACACCTGGGTATTCAGGCAGAAGTTTATATTTCTCCAAG 95259867
Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134
|||| ||||| |||||| ||||||| | ||||||| ||||||||||| |||||||| |||
Sbjct 95259868 TCAATTTCTGAAAAAAACGTGTCACTTGCAAAGTCCTGCATGATCCTTGTCACAAATAGT 95259927
Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194
||||| ||| |||| ||||| ||||| |||||||| || |||| ||||||
Sbjct 95259928 TTAAGT-------GAT---TCATGGCTTCCTTATAAACAGAACTGCCACCAACTATCCAA 95259977
Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254
| ||||||||||||||||||||||||||| ||| ||||||||||| |||||||| |||
Sbjct 95259978 ATCATGTCTACTTTATTTGCTAATTCTGGTCCTTCAGTAAGTTTTAAGGCATCATCCAAA 95260037
Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314
|| | || | ||||||||||| |||||| | ||||| ||||| |||||||||| | |
Sbjct 95260038 CTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAA 95260097
Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374
|||||||| | |||||||| || |||||||||||||| |||||||| ||||| |||||
Sbjct 95260098 TTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCC 95260157
Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434
|||||||| | |||||||||| | ||| ||||| || || |||||||| |||||||
Sbjct 95260158 ATAATCACCAGATTCTGTTTACCCTCTACTGAAGAAGTTGTGGTCATTCTCTGGAAATAC 95260217
Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494
| || |||||| | ||| |||| |||| || || | ||||| ||||||||||||
Sbjct 95260218 CTGAATTCATTCCTGAGTGGCGGCCTGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTT 95260277
Query 4495 TGAGCTACAGCAACAATGCAGTTTAG 4520
|| | ||||| || |||||||||||
Sbjct 95260278 TGGGACACAGCGACGATGCAGTTTAG 95260303
>seq39
Length=107640188
Score = 412 bits (456), Expect = 2e-110
Identities = 434/567 (77%), Gaps = 7/567 (1%)
Strand=Plus/Plus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014
|||| || || ||||||| ||||||||||| | ||||||||||||||||||| | ||||
Sbjct 23976971 AAAACACCTTCATATTAATCATTCTTCTCATGTTCTTCAAATTTGTACTTAATGCCTTTC 23977030
Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074
|| || || |||| | | | ||||| ||| |||||| || || ||| |||||||| | |
Sbjct 23977031 TCCTCCTGGACATCAAAGAAAACACCTGGGTATTCTGGCAGAAATTTATATTTCTCCAAA 23977090
Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134
|||| ||||||||||||| |||||| ||||||||| || |||||| | || ||||| |||
Sbjct 23977091 TCAATTTCTGGAAAAAAG-TGTCACTTTCAAAGTCCTGTATGATCTTTGTGACAAATAGT 23977149
Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACAC-AGAACTACCTCCAATTATCCA 4193
|||||| || || | | | || | ||| ||||| | ||||||||| |||| ||||||
Sbjct 23977150 TTAAGACTGCTTGAGTGATTAATGGATTCCTTATAAAATAGAACTACCACCAACTATCCA 23977209
Query 4194 GACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAA 4253
| ||||||||||||||||||||||||||| | || ||||||||| ||||| || |
Sbjct 23977210 AATCATGTCTACTTTATTTGCTAATTCTGGTTATT----AAGTTTTAAGGCATCCTCCAG 23977265
Query 4254 ACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAAC 4313
||| | || | ||| ||| ||| |||||| | || | | || || |||||||| |
Sbjct 23977266 ACTTCTTGCAAGAAATTGATCTCCTTGTGGAGGTTCTTGTGGTCTCTC-CTGAGAACTAA 23977324
Query 4314 ATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACC 4373
||||||||| |||||||| || ||||||||||||| |||||||| |||| || |
Sbjct 23977325 ATTAATTCTATTCTTTAAAGGTCGAATCTTCTCAGGAATGGAGAACCAGATCTTCCTAGC 23977384
Query 4374 CATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATG 4433
||||||||| |||||||||||| || ||| || || || || |||| ||| |||||||
Sbjct 23977385 CATAATCACCAAATTCTGTTTACCTTCTACTGAGGAGGTTGTGGTCACTCTCTGGAAATA 23977444
Query 4434 TTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTT 4493
| || |||||| | ||| ||||| |||| || || | ||||| |||||||| ||
Sbjct 23977445 CCTGAATTCATTCCTGAGTGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATCTT 23977504
Query 4494 TTGAGCTACAGCAACAATGCAGTTTAG 4520
|| | |||| | |||||||||||
Sbjct 23977505 CTGGGACACAGTGATGATGCAGTTTAG 23977531
>seq235
Length=173266796
Score = 315 bits (348), Expect = 5e-81
Identities = 419/576 (73%), Gaps = 12/576 (2%)
Strand=Plus/Plus
Query 3963 TTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTG 4022
||| ||||||| |||||| |||||||||||||||||||||||||| | |||||| || |
Sbjct 64177421 TTTATATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTC 64177480
Query 4023 CACATTAGAAAGAACACTT---GGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAA 4079
||||| ||| | ||||| | ||||||||| |||||||| |||||||||| ||||
Sbjct 64177481 CACATCAGAGACAACACCTTGTGGATATTCTGGGAAAAGTTTATATTTCTCTAAATCATC 64177540
Query 4080 TTCT--GGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTA 4137
|||| || ||||| ||||||| || |||||| |||||||||| |||||||| ||||||
Sbjct 64177541 TTCTAGGGGAAAAAAGTGTCACTTTGAAAGTCCTGCATGATCCATGTCACAAATAGTTTA 64177600
Query 4138 AGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACC 4197
| || | | ||| |||| | ||| ||||| |||||||| ||||| | | | | | |
Sbjct 64177601 AAATGGTCTCT-TAATTCATGGATTCCTTATAAACAGAACTGCCTCCCACTGTAAAAAAC 64177659
Query 4198 ATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTC 4257
| |||| |||||||||||||| | | || || || |||||| |||||| | | |||
Sbjct 64177660 ACGTCTTATTTATTTGCTAATTTTAGTTGCTCAATACCTTTTAAGGCATCACCCAGACT- 64177718
Query 4258 TTAG-CTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATT 4316
|||| | | |||| ||| ||| || | | ||||| ||| | |||| ||| | |||
Sbjct 64177719 TTAGTCAAGAAAAGGAGGTCTTTGCAGTGGTTCCTTGGATTCTCTACTGACAACTAAATT 64177778
Query 4317 AATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCAT 4376
|||| | |||||||| | |||||||||| ||| |||||||| |||| || ||
Sbjct 64177779 AATTATATACTTTAAAGGTTGATTCTTCTCAGTAATCGAGAACCAGTTCTTCCTAATCAA 64177838
Query 4377 AATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTT 4436
|| ||||||| |||||| | | | ||||| | || |||||||||||||| |
Sbjct 64177839 AAATACTAAATGTTGTTTACCCTCTGCTGAAGAGGGTGTGGTCATTCTTTGGAA----TC 64177894
Query 4437 AAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTG 4496
|| | ||| | || || || |||| || || | || |||||||| || ||
Sbjct 64177895 GAATTTATTTTTGAGCTGGGGTCAGGGCAGGTCCCCATTCCTGATGATGCCCATCTTCTG 64177954
Query 4497 AGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532
| |||| ||||||| |||||| | ||||||||
Sbjct 64177955 GGAAACAGTGACAATGCGGTTTAGCGGATGAACCAT 64177990
Score = 279 bits (308), Expect = 4e-70
Identities = 233/284 (82%), Gaps = 1/284 (0%)
Strand=Plus/Plus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014
|||| || || | ||||| |||||||| |||||||||||||||||||||||| | ||||
Sbjct 57219112 AAAACACCTTCATGTTAATCATTCTTCTTATATACTTCAAATTTGTACTTAATGCCTTTC 57219171
Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074
|| || || |||| ||| ||||||| || |||||| || |||||| |||||||| |
Sbjct 57219172 TCCTCCTGGACATCAGAGAGAACACCAGGGTATTCTGGCAGAAGTTTATATTTCTCAAAG 57219231
Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTC-AAAGTCTTGCATGATCCTAGTCACAAACAG 4133
|||| |||||||||| | ||||||| ||| |||||| ||||||||||| |||||||| ||
Sbjct 57219232 TCAATTTCTGGAAAACACGTGTCACTTTCAAAAGTCCTGCATGATCCTTGTCACAAATAG 57219291
Query 4134 TTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCA 4193
|||||||| || || | | ||| ||||| ||||| |||||||| || ||| ||||||
Sbjct 57219292 TTTAAGATGGCCTGAGTGATTCACGGCTTCCTTATAAACAGAACTGCCATCAAGTATCCA 57219351
Query 4194 GACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTT 4237
| ||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 57219352 AATCATCTCTACTTTATTTGCTAATTCTGGTTGTTCAGTAAGTT 57219395
Score = 206 bits (228), Expect = 2e-48
Identities = 191/242 (79%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990
|||| |||| | |||| ||| ||||| || || || || |||||||| || | ||| ||
Sbjct 53172173 AGCTCTTAGGCCACATGGTGGACAATCGGGGTGACACAGGTGCAGCCCACGGACACCAGT 53172114
Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050
|||||||| |||| || || || |||||| || || || | |||||| || || |||
Sbjct 53172113 ATCTTCTCCAGCCGGAAGGAGTTGGGGCAGTGTGGAGGCTCCCTGCGCAGGACCAGGATC 53172054
Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110
||||| ||||| ||||| ||||||||||||||||| || ||||||||||| || | ||
Sbjct 53172053 TCTTGCTGGATGGGGACAGAGTTCATGTGGTAGTCCACGTTCCCATCAGCGTTGATGCAG 53171994
Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170
|| |||| ||| |||||||| ||||| ||||||||||||||||| || | || ||||||
Sbjct 53171993 CCCAAGTGGCGGCACTTTGCCTCCCAGATCACAGAGGGATATCTCTCAGGGTCCTCATTG 53171934
Query 27171 CG 27172
||
Sbjct 53171933 CG 53171932
Score = 145 bits (160), Expect = 6e-30
Identities = 130/167 (78%), Gaps = 16/167 (10%)
Strand=Plus/Plus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014
|||| || || ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 32048018 AAAACACCTTCATATTAATCATTCTTCTCATATACTTCAAATTTGTACTTAATAC----- 32048072
Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074
|| || ||||| | |||||||||| || || ||| |||||||| | |
Sbjct 32048073 -----------ATCCGAGAGAACGCCTGGATATTCTGGCAGAATTTTATATTTCTCCAAA 32048121
Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCT 4121
|||| |||||||||||| ||||||| ||||||||| |||||||||||
Sbjct 32048122 TCAATTTCTGGAAAAAACGTGTCACTTTCAAAGTCCTGCATGATCCT 32048168
Score = 93.3 bits (102), Expect = 3e-14
Identities = 139/197 (71%), Gaps = 9/197 (5%)
Strand=Plus/Minus
Query 27174 TGGAGAGTCCAAGGAGACGTAGATCTATTGTAGTAGTCTGAAGCCCTTTTAGAACTAGTA 27233
|||||| ||||||| || || |||| |||||||| ||||| | |||||| | | | |||
Sbjct 53170686 TGGAGATTCCAAGGTGAGGTGGATCGGTTGTAGTAATCTGAGGACCTTTTGGGATTGGTA 53170627
Query 27234 TT------CCAGTTACGGATGCTCAAAGTAACCATCACAGACCGTGGAAAGCTATTGTTA 27287
|| || |||| ||||| ||| | |||||||||| ||| || ||| | ||||
Sbjct 53170626 TTGGTATTCCGGTTATGGATGTTCAGGTTGACCATCACAGTCCGGGGGAAGTTCTTGTCC 53170567
Query 27288 GCAGC---TAAGCATCTTGGGGTTTGTGCGCTTGTTATTTCTGACTTTACTATACAATCT 27344
||| | ||||| ||| || ||| | ||| ||| ||| ||| ||||| ||
Sbjct 53170566 TCAGAATTTGGGCATCCTGGATTTCGTGGGATTGCGATTCCTGCCTTCACTATGGCCTCC 53170507
Query 27345 ATGCTCAGCAGCAGAAG 27361
| |||||||||||| ||
Sbjct 53170506 AGGCTCAGCAGCAGTAG 53170490
>seq219
Length=165317712
Score = 147 bits (162), Expect = 2e-30
Identities = 108/126 (86%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
||||| |||||||| || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 63182949 TTATAAACAGAACTGCCACCAACTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGT 63183008
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284
||||| ||||||||||| |||||||||| ||| | | | ||||||||||| ||||||
Sbjct 63183009 TGTTCAGTAAGTTTTAAGGCATCATCTAGACTTCTGGAAAGAAAATGAGCTCCTTGTGGA 63183068
Query 4285 AGCTCC 4290
| |||
Sbjct 63183069 GGTTCC 63183074
Score = 134 bits (148), Expect = 1e-26
Identities = 103/122 (84%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4045 TATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCA 4104
|| ||| || |||||| |||||||| | ||||| |||||||||||| ||||||| ||||
Sbjct 63178984 TACTCTGGCAGAAGTTTATATTTCTCCAAATCAATTTCTGGAAAAAACGTGTCACTTTCA 63179043
Query 4105 AAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCT 4164
||||||||||||||||| |||||||| |||||||||| || ||| | | |||| |||||
Sbjct 63179044 AAGTCTTGCATGATCCTTGTCACAAATAGTTTAAGATGGCCTGGGTGATTCATGGCTTCC 63179103
Query 4165 TT 4166
||
Sbjct 63179104 TT 63179105
Score = 129 bits (142), Expect = 4e-25
Identities = 94/109 (86%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| |||||||||| | ||||||||| || |||||||| || |||||||||||
Sbjct 63194446 CTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCGATTCTTCTCAGG 63194505
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||| ||||| |||||||||||||| | |||||||||| ||
Sbjct 63194506 AATGGAGAACCAGGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 63194554
Score = 105 bits (116), Expect = 5e-18
Identities = 79/93 (85%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014
|||| || ||| ||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 63174201 AAAACACCTTTATATTAATCATTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTT 63174260
Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047
|| || || |||| ||| ||||||| ||| |||
Sbjct 63174261 TCCTCCTGGACATCAGAGAGAACACCTGGGTAT 63174293
>seq848
Length=78004504
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 102038 TATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCT 102097
|||||||| || |||||||||||||| || ||||| || || || | || ||||| |||
Sbjct 14428841 TATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCT 14428900
Query 102098 CTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGC 102157
||| | || || || | || ||||| || ||||||||| |||||||| || | |
Sbjct 14428901 CTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTTTC 14428960
Query 102158 ACGCCAGCTGCTGATAGCTCTTT 102180
|| || | || ||||||||
Sbjct 14428961 ACTCCCTTGGAAGACAGCTCTTT 14428983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361071959685461
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