Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq168 493 9e-135 seq39 412 2e-110 seq235 315 5e-81 seq219 147 2e-30 seq848 82.4 6e-11 >seq168 Length=201391403 Score = 493 bits (546), Expect = 9e-135 Identities = 449/566 (79%), Gaps = 10/566 (2%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||||| ||||||||||||| |||||||||||||||| || |||| Sbjct 95259748 AAAACACCTTCATATTAATCATTCTTCTCATATGCTTCAAATTTGTACTTGATGTGTTTC 95259807 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 | || || |||| ||| ||||||| ||| ||||| || |||||| |||||||| | Sbjct 95259808 CCCTCCTGGACATCAGAGAGAACACCTGGGTATTCAGGCAGAAGTTTATATTTCTCCAAG 95259867 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| ||||| |||||| ||||||| | ||||||| ||||||||||| |||||||| ||| Sbjct 95259868 TCAATTTCTGAAAAAAACGTGTCACTTGCAAAGTCCTGCATGATCCTTGTCACAAATAGT 95259927 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 ||||| ||| |||| ||||| ||||| |||||||| || |||| |||||| Sbjct 95259928 TTAAGT-------GAT---TCATGGCTTCCTTATAAACAGAACTGCCACCAACTATCCAA 95259977 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 | ||||||||||||||||||||||||||| ||| ||||||||||| |||||||| ||| Sbjct 95259978 ATCATGTCTACTTTATTTGCTAATTCTGGTCCTTCAGTAAGTTTTAAGGCATCATCCAAA 95260037 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || | || | ||||||||||| |||||| | ||||| ||||| |||||||||| | | Sbjct 95260038 CTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAA 95260097 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 |||||||| | |||||||| || |||||||||||||| |||||||| ||||| ||||| Sbjct 95260098 TTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCC 95260157 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434 |||||||| | |||||||||| | ||| ||||| || || |||||||| ||||||| Sbjct 95260158 ATAATCACCAGATTCTGTTTACCCTCTACTGAAGAAGTTGTGGTCATTCTCTGGAAATAC 95260217 Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494 | || |||||| | ||| |||| |||| || || | ||||| |||||||||||| Sbjct 95260218 CTGAATTCATTCCTGAGTGGCGGCCTGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTT 95260277 Query 4495 TGAGCTACAGCAACAATGCAGTTTAG 4520 || | ||||| || ||||||||||| Sbjct 95260278 TGGGACACAGCGACGATGCAGTTTAG 95260303 >seq39 Length=107640188 Score = 412 bits (456), Expect = 2e-110 Identities = 434/567 (77%), Gaps = 7/567 (1%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||||| ||||||||||| | ||||||||||||||||||| | |||| Sbjct 23976971 AAAACACCTTCATATTAATCATTCTTCTCATGTTCTTCAAATTTGTACTTAATGCCTTTC 23977030 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || |||| | | | ||||| ||| |||||| || || ||| |||||||| | | Sbjct 23977031 TCCTCCTGGACATCAAAGAAAACACCTGGGTATTCTGGCAGAAATTTATATTTCTCCAAA 23977090 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| ||||||||||||| |||||| ||||||||| || |||||| | || ||||| ||| Sbjct 23977091 TCAATTTCTGGAAAAAAG-TGTCACTTTCAAAGTCCTGTATGATCTTTGTGACAAATAGT 23977149 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACAC-AGAACTACCTCCAATTATCCA 4193 |||||| || || | | | || | ||| ||||| | ||||||||| |||| |||||| Sbjct 23977150 TTAAGACTGCTTGAGTGATTAATGGATTCCTTATAAAATAGAACTACCACCAACTATCCA 23977209 Query 4194 GACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAA 4253 | ||||||||||||||||||||||||||| | || ||||||||| ||||| || | Sbjct 23977210 AATCATGTCTACTTTATTTGCTAATTCTGGTTATT----AAGTTTTAAGGCATCCTCCAG 23977265 Query 4254 ACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAAC 4313 ||| | || | ||| ||| ||| |||||| | || | | || || |||||||| | Sbjct 23977266 ACTTCTTGCAAGAAATTGATCTCCTTGTGGAGGTTCTTGTGGTCTCTC-CTGAGAACTAA 23977324 Query 4314 ATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACC 4373 ||||||||| |||||||| || ||||||||||||| |||||||| |||| || | Sbjct 23977325 ATTAATTCTATTCTTTAAAGGTCGAATCTTCTCAGGAATGGAGAACCAGATCTTCCTAGC 23977384 Query 4374 CATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATG 4433 ||||||||| |||||||||||| || ||| || || || || |||| ||| ||||||| Sbjct 23977385 CATAATCACCAAATTCTGTTTACCTTCTACTGAGGAGGTTGTGGTCACTCTCTGGAAATA 23977444 Query 4434 TTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTT 4493 | || |||||| | ||| ||||| |||| || || | ||||| |||||||| || Sbjct 23977445 CCTGAATTCATTCCTGAGTGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATCTT 23977504 Query 4494 TTGAGCTACAGCAACAATGCAGTTTAG 4520 || | |||| | ||||||||||| Sbjct 23977505 CTGGGACACAGTGATGATGCAGTTTAG 23977531 >seq235 Length=173266796 Score = 315 bits (348), Expect = 5e-81 Identities = 419/576 (73%), Gaps = 12/576 (2%) Strand=Plus/Plus Query 3963 TTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTG 4022 ||| ||||||| |||||| |||||||||||||||||||||||||| | |||||| || | Sbjct 64177421 TTTATATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTC 64177480 Query 4023 CACATTAGAAAGAACACTT---GGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAA 4079 ||||| ||| | ||||| | ||||||||| |||||||| |||||||||| |||| Sbjct 64177481 CACATCAGAGACAACACCTTGTGGATATTCTGGGAAAAGTTTATATTTCTCTAAATCATC 64177540 Query 4080 TTCT--GGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTA 4137 |||| || ||||| ||||||| || |||||| |||||||||| |||||||| |||||| Sbjct 64177541 TTCTAGGGGAAAAAAGTGTCACTTTGAAAGTCCTGCATGATCCATGTCACAAATAGTTTA 64177600 Query 4138 AGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACC 4197 | || | | ||| |||| | ||| ||||| |||||||| ||||| | | | | | | Sbjct 64177601 AAATGGTCTCT-TAATTCATGGATTCCTTATAAACAGAACTGCCTCCCACTGTAAAAAAC 64177659 Query 4198 ATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTC 4257 | |||| |||||||||||||| | | || || || |||||| |||||| | | ||| Sbjct 64177660 ACGTCTTATTTATTTGCTAATTTTAGTTGCTCAATACCTTTTAAGGCATCACCCAGACT- 64177718 Query 4258 TTAG-CTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATT 4316 |||| | | |||| ||| ||| || | | ||||| ||| | |||| ||| | ||| Sbjct 64177719 TTAGTCAAGAAAAGGAGGTCTTTGCAGTGGTTCCTTGGATTCTCTACTGACAACTAAATT 64177778 Query 4317 AATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCAT 4376 |||| | |||||||| | |||||||||| ||| |||||||| |||| || || Sbjct 64177779 AATTATATACTTTAAAGGTTGATTCTTCTCAGTAATCGAGAACCAGTTCTTCCTAATCAA 64177838 Query 4377 AATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTT 4436 || ||||||| |||||| | | | ||||| | || |||||||||||||| | Sbjct 64177839 AAATACTAAATGTTGTTTACCCTCTGCTGAAGAGGGTGTGGTCATTCTTTGGAA----TC 64177894 Query 4437 AAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTG 4496 || | ||| | || || || |||| || || | || |||||||| || || Sbjct 64177895 GAATTTATTTTTGAGCTGGGGTCAGGGCAGGTCCCCATTCCTGATGATGCCCATCTTCTG 64177954 Query 4497 AGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 | |||| ||||||| |||||| | |||||||| Sbjct 64177955 GGAAACAGTGACAATGCGGTTTAGCGGATGAACCAT 64177990 Score = 279 bits (308), Expect = 4e-70 Identities = 233/284 (82%), Gaps = 1/284 (0%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || | ||||| |||||||| |||||||||||||||||||||||| | |||| Sbjct 57219112 AAAACACCTTCATGTTAATCATTCTTCTTATATACTTCAAATTTGTACTTAATGCCTTTC 57219171 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || |||| ||| ||||||| || |||||| || |||||| |||||||| | Sbjct 57219172 TCCTCCTGGACATCAGAGAGAACACCAGGGTATTCTGGCAGAAGTTTATATTTCTCAAAG 57219231 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTC-AAAGTCTTGCATGATCCTAGTCACAAACAG 4133 |||| |||||||||| | ||||||| ||| |||||| ||||||||||| |||||||| || Sbjct 57219232 TCAATTTCTGGAAAACACGTGTCACTTTCAAAAGTCCTGCATGATCCTTGTCACAAATAG 57219291 Query 4134 TTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCA 4193 |||||||| || || | | ||| ||||| ||||| |||||||| || ||| |||||| Sbjct 57219292 TTTAAGATGGCCTGAGTGATTCACGGCTTCCTTATAAACAGAACTGCCATCAAGTATCCA 57219351 Query 4194 GACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTT 4237 | ||| ||||||||||||||||||||||| ||||| ||||||| Sbjct 57219352 AATCATCTCTACTTTATTTGCTAATTCTGGTTGTTCAGTAAGTT 57219395 Score = 206 bits (228), Expect = 2e-48 Identities = 191/242 (79%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990 |||| |||| | |||| ||| ||||| || || || || |||||||| || | ||| || Sbjct 53172173 AGCTCTTAGGCCACATGGTGGACAATCGGGGTGACACAGGTGCAGCCCACGGACACCAGT 53172114 Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050 |||||||| |||| || || || |||||| || || || | |||||| || || ||| Sbjct 53172113 ATCTTCTCCAGCCGGAAGGAGTTGGGGCAGTGTGGAGGCTCCCTGCGCAGGACCAGGATC 53172054 Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110 ||||| ||||| ||||| ||||||||||||||||| || ||||||||||| || | || Sbjct 53172053 TCTTGCTGGATGGGGACAGAGTTCATGTGGTAGTCCACGTTCCCATCAGCGTTGATGCAG 53171994 Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170 || |||| ||| |||||||| ||||| ||||||||||||||||| || | || |||||| Sbjct 53171993 CCCAAGTGGCGGCACTTTGCCTCCCAGATCACAGAGGGATATCTCTCAGGGTCCTCATTG 53171934 Query 27171 CG 27172 || Sbjct 53171933 CG 53171932 Score = 145 bits (160), Expect = 6e-30 Identities = 130/167 (78%), Gaps = 16/167 (10%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 32048018 AAAACACCTTCATATTAATCATTCTTCTCATATACTTCAAATTTGTACTTAATAC----- 32048072 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || ||||| | |||||||||| || || ||| |||||||| | | Sbjct 32048073 -----------ATCCGAGAGAACGCCTGGATATTCTGGCAGAATTTTATATTTCTCCAAA 32048121 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCT 4121 |||| |||||||||||| ||||||| ||||||||| ||||||||||| Sbjct 32048122 TCAATTTCTGGAAAAAACGTGTCACTTTCAAAGTCCTGCATGATCCT 32048168 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 9/197 (5%) Strand=Plus/Minus Query 27174 TGGAGAGTCCAAGGAGACGTAGATCTATTGTAGTAGTCTGAAGCCCTTTTAGAACTAGTA 27233 |||||| ||||||| || || |||| |||||||| ||||| | |||||| | | | ||| Sbjct 53170686 TGGAGATTCCAAGGTGAGGTGGATCGGTTGTAGTAATCTGAGGACCTTTTGGGATTGGTA 53170627 Query 27234 TT------CCAGTTACGGATGCTCAAAGTAACCATCACAGACCGTGGAAAGCTATTGTTA 27287 || || |||| ||||| ||| | |||||||||| ||| || ||| | |||| Sbjct 53170626 TTGGTATTCCGGTTATGGATGTTCAGGTTGACCATCACAGTCCGGGGGAAGTTCTTGTCC 53170567 Query 27288 GCAGC---TAAGCATCTTGGGGTTTGTGCGCTTGTTATTTCTGACTTTACTATACAATCT 27344 ||| | ||||| ||| || ||| | ||| ||| ||| ||| ||||| || Sbjct 53170566 TCAGAATTTGGGCATCCTGGATTTCGTGGGATTGCGATTCCTGCCTTCACTATGGCCTCC 53170507 Query 27345 ATGCTCAGCAGCAGAAG 27361 | |||||||||||| || Sbjct 53170506 AGGCTCAGCAGCAGTAG 53170490 >seq219 Length=165317712 Score = 147 bits (162), Expect = 2e-30 Identities = 108/126 (86%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| || |||| |||||||||||||||||||||||||||||||||||| Sbjct 63182949 TTATAAACAGAACTGCCACCAACTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGT 63183008 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 ||||| ||||||||||| |||||||||| ||| | | | ||||||||||| |||||| Sbjct 63183009 TGTTCAGTAAGTTTTAAGGCATCATCTAGACTTCTGGAAAGAAAATGAGCTCCTTGTGGA 63183068 Query 4285 AGCTCC 4290 | ||| Sbjct 63183069 GGTTCC 63183074 Score = 134 bits (148), Expect = 1e-26 Identities = 103/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4045 TATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCA 4104 || ||| || |||||| |||||||| | ||||| |||||||||||| ||||||| |||| Sbjct 63178984 TACTCTGGCAGAAGTTTATATTTCTCCAAATCAATTTCTGGAAAAAACGTGTCACTTTCA 63179043 Query 4105 AAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCT 4164 ||||||||||||||||| |||||||| |||||||||| || ||| | | |||| ||||| Sbjct 63179044 AAGTCTTGCATGATCCTTGTCACAAATAGTTTAAGATGGCCTGGGTGATTCATGGCTTCC 63179103 Query 4165 TT 4166 || Sbjct 63179104 TT 63179105 Score = 129 bits (142), Expect = 4e-25 Identities = 94/109 (86%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| |||||||||| | ||||||||| || |||||||| || ||||||||||| Sbjct 63194446 CTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCGATTCTTCTCAGG 63194505 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| |||||||||||||| | |||||||||| || Sbjct 63194506 AATGGAGAACCAGGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 63194554 Score = 105 bits (116), Expect = 5e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || ||| ||||||| ||||||||||||||||||||||||||||||||| | ||| Sbjct 63174201 AAAACACCTTTATATTAATCATTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTT 63174260 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || || || |||| ||| ||||||| ||| ||| Sbjct 63174261 TCCTCCTGGACATCAGAGAGAACACCTGGGTAT 63174293 >seq848 Length=78004504 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 102038 TATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCT 102097 |||||||| || |||||||||||||| || ||||| || || || | || ||||| ||| Sbjct 14428841 TATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCT 14428900 Query 102098 CTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGC 102157 ||| | || || || | || ||||| || ||||||||| |||||||| || | | Sbjct 14428901 CTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTTTC 14428960 Query 102158 ACGCCAGCTGCTGATAGCTCTTT 102180 || || | || |||||||| Sbjct 14428961 ACTCCCTTGGAAGACAGCTCTTT 14428983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361071959685461