Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq931 369 4e-97 seq1 149 7e-31 seq39 120 4e-22 seq638 111 2e-19 seq860 98.7 1e-15 >seq931 Length=156331669 Score = 369 bits (408), Expect = 4e-97 Identities = 548/775 (71%), Gaps = 4/775 (1%) Strand=Plus/Plus Query 23944 TAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTT 24003 |||| |||| ||| || | ||| ||||| |||||||| || ||| ||||| | Sbjct 44830118 TAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAG 44830177 Query 24004 CACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAG 24063 |||||||| || || || || || || | ||| | || || ||||||||||| || Sbjct 44830178 TGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCT 44830237 Query 24064 AGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTT 24123 || || | | || || ||| ||| | || || ||| | | | |||| Sbjct 44830238 GAACAGCATTGATAATTATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTT 44830297 Query 24124 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 24183 | |||||||| || || ||||| ||||||| |||||| ||||| ||||| | ||| |||| Sbjct 44830298 TGAACATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGG 44830357 Query 24184 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 24243 |||||||||| || ||||| | || || || || ||||| ||||| || ||||| || | Sbjct 44830358 AAAACGTGAGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAAC 44830417 Query 24244 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGG 24300 |||||||||| || ||||||||||| || ||||| | || ||| ||||| | | Sbjct 44830418 CAGAAAAGAAGATGCCTTCTACTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCT 44830477 Query 24301 CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 24360 | |||| ||||| |||||||| |||||||| || ||||||||||| || | Sbjct 44830478 CTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-T 44830536 Query 24361 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 24420 | || ||||| |||||| | | |||| || |||||| | || || ||||| | | Sbjct 44830537 CAATGGCATTGAAGAGAAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGA 44830596 Query 24421 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 24480 ||||||||||||| ||||| |||||||| ||||| ||||| || || |||||||| | | Sbjct 44830597 GACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGG 44830656 Query 24481 CCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 24540 | || |||||||| ||| | | |||||| || | ||||||||||| ||||| || | Sbjct 44830657 CTTCTGTAATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCAT 44830716 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 24600 |||| |||||||| || ||| ||||| |||||||||| | || || || | || Sbjct 44830717 CACTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCAGGG 44830776 Query 24601 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 24660 | ||| | || || || || | ||||| || || ||||| || || |||| Sbjct 44830777 GTTCCCAGTGCCGAATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCT 44830836 Query 24661 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 | ||||| |||||||| | |||||| ||||| || | || || || || ||||| Sbjct 44830837 CCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44830891 Score = 192 bits (212), Expect = 7e-44 Identities = 382/557 (69%), Gaps = 18/557 (3%) Strand=Plus/Minus Query 24147 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 24206 ||||||| |||||| || || ||||| | ||| |||||||| ||||| || ||||| || Sbjct 144506184 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 144506125 Query 24207 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 24266 || | || || ||||| ||||| ||||| || ||||||||||| | | ||| | Sbjct 144506124 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCGCC 144506065 Query 24267 GCCGCAAAGGC--AAT--AAGTCTTTCTCCATAACCGGCGCTGTC-ATGT-----ATCC- 24315 |||||||| || || | |||||||| || |||| ||| |||| Sbjct 144506064 AGGGCAAAGGCTGCATGCAACACGTTCTCCAT---GGGTAATGTCTTTGTTCCCAATCCA 144506008 Query 24316 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 24375 || || ||||| | |||||||| || |||| |||||| || || || ||| | |||| Sbjct 144506007 ACACAAGA-CCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCAATGGCACTGAAGA 144505950 Query 24376 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 24435 || | | |||| || |||||||| |||||| ||||| | ||| ||| ||||| | Sbjct 144505949 GAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCAG 144505892 Query 24436 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 24495 ||| |||||||| || || ||||| || || ||||| || | || |||||||| | Sbjct 144505891 AATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTTCTGTAATCTGAA 144505832 Query 24496 CTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 24555 ||||| | |||| |||| | || ||||||| | ||| || |||| ||||| || | Sbjct 144505831 CTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCACATGCTGCGAAGA 144505772 Query 24556 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 24615 | |||| | ||| |||||||||| ||| || || | || | ||| | | Sbjct 144505771 AAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCCCAGTGCCAAA 144505712 Query 24616 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 24675 | || || || | ||||| || | | |||| || || ||||| | || || |||| Sbjct 144505711 TGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCTTTTACA 144505652 Query 24676 TATTCCAGATGTCATGA 24692 | ||||| || |||||| Sbjct 144505651 TTTTCCAAATATCATGA 144505635 >seq1 Length=228908639 Score = 149 bits (164), Expect = 7e-31 Identities = 238/336 (71%), Gaps = 13/336 (4%) Strand=Plus/Plus Query 24249 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTG 24305 ||||| || |||| ||||| |||||||| | || | ||| ||||| | | | || Sbjct 140322339 AAGAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTTTG 140322398 Query 24306 TCAT--GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 || ||| | ||| | || |||| |||||||| |||||||| ||| || | Sbjct 140322399 TCCCCAGTA-CAACTCAAG-GCGCAATTTGCCTTCTTG---ACACAAGG---TGTTTCAA 140322450 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 | | || |||||| | | |||| || |||||| | || || ||||| | |||| Sbjct 140322451 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGAC 140322510 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 |||||||||| ||||| ||||||| ||||| ||||| || | |||||||| | || | Sbjct 140322511 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 140322570 Query 24484 CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 24543 | |||||||| |||||| | |||||| || | || |||||||| ||||| || |||| Sbjct 140322571 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 140322630 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 24579 | |||||||| || |||| ||| | |||||||| Sbjct 140322631 TTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 140322666 >seq39 Length=107640188 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 97368599 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 97368658 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| |||||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 97368659 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 97368718 Query 24277 C 24277 | Sbjct 97368719 C 97368719 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| Sbjct 97370970 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 97371029 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||| || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 97371030 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 97371089 >seq638 Length=135235416 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 3898777 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 3898718 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 3898717 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 3898658 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 3898657 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 3898607 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 3895939 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATG 3895880 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 3895879 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 3895820 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 3895819 CTGTTTCTTATACCATA 3895803 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| |||||||||||||| | || |||||||||| | Sbjct 3884847 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 3884788 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 3884787 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 3884728 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 3884727 AGGCTCCAGGTAAAT 3884713 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 3869306 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTGGCTGCCAGGA 3869247 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||||| || || || | ||||| | || || ||| |||| || | || ||| || | Sbjct 3869246 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 3869187 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 3869186 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 3869141 >seq860 Length=57935654 Score = 98.7 bits (108), Expect = 1e-15 Identities = 181/259 (70%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940 |||||| || ||||| ||| ||| | ||| | ||| ||| | || ||| |||||| Sbjct 51798142 TCCGGTAGAGCCAAAACCTCCTGAACCCCTTTTGGTGTC--ATCCAAAGCTTGAACTTCT 51798085 Query 21941 TTCAGTTCTGGAT-AATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATT 21999 | | |||||||| || | || |||| | | || ||||| || |||| ||| || | || Sbjct 51798084 TCTATTTCTGGATTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 51798025 Query 22000 T-ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAAT 22058 | || | ||| | | ||| | | ||||| || | || || | |||||| ||||||| Sbjct 51798024 TGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAAT 51797965 Query 22059 CTTCGTCTATTACACCGCCTCCTATAT---CAATGCCTTTTAGGGACAGACCAGACCTAG 22115 |||| ||| | ||||| |||||| || ||| | |||| | || |||||||| | Sbjct 51797964 CTTCATCTGTGACACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTG 51797905 Query 22116 GAGCTATTCTACCATAGCA 22134 |||||| ||| ||||| || Sbjct 51797904 GAGCTACTCT-CCATAACA 51797887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593419462499280