Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq168 104 2e-17 seq235 95.1 1e-14 seq931 86.0 5e-12 seq885 82.4 7e-11 >seq1 Length=228908639 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || ||| | ||||| | ||||| || ||||| ||| ||| | ||||| Sbjct 172115947 AAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGCTGAACC 172116006 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || ||| | | || | ||| || || ||||| ||||| | || || Sbjct 172116007 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 172116066 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| || ||||| |||||||| ||||| || ||||||||| ||| || | || || Sbjct 172116067 TCAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTA 172116126 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||||||| ||||| ||||||||||| | ||||| Sbjct 172116127 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 172116162 >seq168 Length=201391403 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 5653671 AAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAGACCATCACCCTCGAGGTTGAACCC 5653730 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 5653731 TCGGATACGATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAGGAATTCCTCCTGAT 5653790 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || || ||||| |||||||| ||||| || ||||||||| ||| || | || ||| Sbjct 5653791 CAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTAC 5653850 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| ||||| ||||||||||| | ||||| Sbjct 5653851 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 5653885 >seq235 Length=173266796 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||||| ||||| | | || || ||||| ||| ||| | |||||| Sbjct 115827691 AAAATGCAGATTTTCATGAAAACTCTTATGGAGAAGACCATCACCCTCGAGGCTGAACCC 115827750 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 || || | | || | ||| || || ||||| ||||| | || ||| Sbjct 115827751 TTGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 115827810 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| || || |||||||||||| ||| || | || ||| Sbjct 115827811 CAGCAAAGACTGATCTTTGCTGGAAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 115827870 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 | |||||| ||||| ||||||||||| | ||||| Sbjct 115827871 AGTATTCAAAAGGATTCTACTCTTCATCTTGTGTT 115827905 >seq931 Length=156331669 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 ||| |||| || ||| | ||||| | | ||| || ||||| ||| || |||||| Sbjct 3273250 AAACTGCAGATTTTCGTGAAAACCCTAAGGGGGAAGACCATCACCCTTGAGGTTGAACCC 3273309 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| || | | || | ||| || || ||||| ||||| | || ||| Sbjct 3273310 TCAGATGCGATAGAAAATGTAAAGGCCAAGATCTAGGATAAGGAAGGAATTCCTCCTGAT 3273369 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| ||||| |||||||||||| ||| || | || | | Sbjct 3273370 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTGC 3273429 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||| ||||| |||||||||| | ||||| Sbjct 3273430 AACATTCAAAAGGAGCCTACTCTTCATCTTGTGTT 3273464 >seq885 Length=63231202 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || || | ||||| | || || || ||||| ||| ||| | |||||| Sbjct 17717156 AAAATGCAGATTTTTGTGAAAACCCTCACAGGGAAGACCATCACCCTCGAGGCTGAACCC 17717215 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| ||| | | || | ||| || | ||||| |||| | || ||| Sbjct 17717216 TCAGAAACGATAGAAAATATAAAGGCCAAGACCCAGGATAAGTAAGGAATTCCTCCTGAT 17717275 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || ||||||| |||||||| |||| |||||||| ||| || || | || ||| Sbjct 17717276 CAGTAAAGACTGATCTTTGCTAGCAAGCAACTGGAGGATGTATGTGCTTTGTCTGACTAC 17717335 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||| ||||| ||||||||||| | ||||| Sbjct 17717336 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 17717370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428123474534705