Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq168 228 1e-54
seq848 159 4e-34
seq1 158 1e-33
>seq168
Length=201391403
Score = 228 bits (252), Expect = 1e-54
Identities = 607/915 (66%), Gaps = 23/915 (3%)
Strand=Plus/Plus
Query 9460 GCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATAT 9518
|| ||| | || ||| | ||||| || ||||| | || |||| | ||||||||| |
Sbjct 47156742 GCCCAGTTCGTGCCCCCGCTGTACTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAATGT 47156800
Query 9519 CTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACT 9578
| |||||||| || |||||| ||||| || | || || | || ||||| | ||
Sbjct 47156801 GGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACCT 47156860
Query 9579 GTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTA 9638
| | ||| |||| || || ||| |||| || || || || | || || ||||| |||||
Sbjct 47156861 GCTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACTA 47156920
Query 9639 TATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGT 9698
| | | | ||| | ||| |||||| | | ||||||| || ||| || |
Sbjct 47156921 TGTCAGGGGG---CATAACTGGGTTTTTGGCCATGGCATGTGTAAGCTCCTCTCGGCGTT 47156977
Query 9699 GTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTA 9758
| | ||| |||||||| || |||||| ||| |||||||| || | ||||||||
Sbjct 47156978 TTATCACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTGCTGACGATCGACAGGTA 47157037
Query 9759 TCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATA 9816
|| || ||||| ||||||| ||| || ||| | || || || | ||| |
Sbjct 47157038 CCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCCC--GGACTGTCACTTTTGGTGTC 47157095
Query 9817 GTTACCTGTGTATGT-ACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTT 9875
| ||| | | ||| |||||| ||||||| | | | || ||||||||| ||||
Sbjct 47157096 ATCACCAGCAT-TGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATCTT 47157154
Query 9876 TCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATGT 9934
||| |||| | | | || | || || | | |||||||||
Sbjct 47157155 CTATGAGATTGAAGA-GTTGTTTGAAGAGACTCTTTGCAGTGTTGTTTACCCAGAGGATA 47157213
Query 9935 CTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGC 9994
| | || ||||||| |||| | | ||| || || ||||| || | |
Sbjct 47157214 CAGTATATAGCTGGAGGCATTTCCACACTCTGAGAATGACCATCTTCTGTCTCGTTCTCC 47157273
Query 9995 CTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCA 10054
|||||||| | ||||| |||||||| | ||| |||| || ||| ||||| ||||||
Sbjct 47157274 CTCTGCTCGTCATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCCA 47157333
Query 10055 GCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTT 10114
| || || ||||||||||||||| ||||||| ||||||||||||| || | ||| |||
Sbjct 47157334 GTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCGGTGTTTTTCATTT 47157393
Query 10115 TTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA--- 10171
| |||||||||||||| | | | |||| || ||| || ||| | || |||||
Sbjct 47157394 TCTGGACACCCTACAATGTGGCTATCCTTCTCTCTTTCTATCA----ATCCATCTTATTT 47157449
Query 10172 --ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGT 10229
| || | |||| ||||| | ||||| ||| ||||| | ||| | |
Sbjct 47157450 GGAAATG-ACTGTGAGCGGAGCAAGCATCTGGACCTGGTCATGCTGGTGACAGAGGTGAT 47157508
Query 10230 AGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAG 10289
|||||| | ||||| ||||| ||||| ||||||||||| || || || |||| ||| |
Sbjct 47157509 CGCCTACTCCCACTGCTGCATGAACCCGGTGATCTACGCCTTTGTTGGAGAGAGGTTCCG 47157568
Query 10290 AAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCC 10349
| ||||| |||||||||||||| | ||| ||| |||| ||| ||||||||
Sbjct 47157569 GAAGTACCTGCGCCACTTCTTCCACAGGCATGTGCTCATGCACCTGGGCAGATACATCCC 47157628
Query 10350 CTTCCTGTCTGGTGA 10364
||||| || ||||
Sbjct 47157629 ATTCCTTCCTAGTGA 47157643
Score = 228 bits (252), Expect = 1e-54
Identities = 607/915 (66%), Gaps = 23/915 (3%)
Strand=Plus/Plus
Query 176346 GCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATAT 176404
|| ||| | || ||| | ||||| || ||||| | || |||| | ||||||||| |
Sbjct 47156742 GCCCAGTTCGTGCCCCCGCTGTACTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAATGT 47156800
Query 176405 CTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACT 176464
| |||||||| || |||||| ||||| || | || || | || ||||| | ||
Sbjct 47156801 GGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACCT 47156860
Query 176465 GTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTA 176524
| | ||| |||| || || ||| |||| || || || || | || || ||||| |||||
Sbjct 47156861 GCTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACTA 47156920
Query 176525 TATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGT 176584
| | | | ||| | ||| |||||| | | ||||||| || ||| || |
Sbjct 47156921 TGTCAGGGGG---CATAACTGGGTTTTTGGCCATGGCATGTGTAAGCTCCTCTCGGCGTT 47156977
Query 176585 GTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTA 176644
| | ||| |||||||| || |||||| ||| |||||||| || | ||||||||
Sbjct 47156978 TTATCACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTGCTGACGATCGACAGGTA 47157037
Query 176645 TCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATA 176702
|| || ||||| ||||||| ||| || ||| | || || || | ||| |
Sbjct 47157038 CCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCCC--GGACTGTCACTTTTGGTGTC 47157095
Query 176703 GTTACCTGTGTATGT-ACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTT 176761
| ||| | | ||| |||||| ||||||| | | | || ||||||||| ||||
Sbjct 47157096 ATCACCAGCAT-TGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATCTT 47157154
Query 176762 TCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATGT 176820
||| |||| | | | || | || || | | |||||||||
Sbjct 47157155 CTATGAGATTGAAGA-GTTGTTTGAAGAGACTCTTTGCAGTGTTGTTTACCCAGAGGATA 47157213
Query 176821 CTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGC 176880
| | || ||||||| |||| | | ||| || || ||||| || | |
Sbjct 47157214 CAGTATATAGCTGGAGGCATTTCCACACTCTGAGAATGACCATCTTCTGTCTCGTTCTCC 47157273
Query 176881 CTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCA 176940
|||||||| | ||||| |||||||| | ||| |||| || ||| ||||| ||||||
Sbjct 47157274 CTCTGCTCGTCATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCCA 47157333
Query 176941 GCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTT 177000
| || || ||||||||||||||| ||||||| ||||||||||||| || | ||| |||
Sbjct 47157334 GTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCGGTGTTTTTCATTT 47157393
Query 177001 TTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA--- 177057
| |||||||||||||| | | | |||| || ||| || ||| | || |||||
Sbjct 47157394 TCTGGACACCCTACAATGTGGCTATCCTTCTCTCTTTCTATCA----ATCCATCTTATTT 47157449
Query 177058 --ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGT 177115
| || | |||| ||||| | ||||| ||| ||||| | ||| | |
Sbjct 47157450 GGAAATG-ACTGTGAGCGGAGCAAGCATCTGGACCTGGTCATGCTGGTGACAGAGGTGAT 47157508
Query 177116 AGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAG 177175
|||||| | ||||| ||||| ||||| ||||||||||| || || || |||| ||| |
Sbjct 47157509 CGCCTACTCCCACTGCTGCATGAACCCGGTGATCTACGCCTTTGTTGGAGAGAGGTTCCG 47157568
Query 177176 AAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCC 177235
| ||||| |||||||||||||| | ||| ||| |||| ||| ||||||||
Sbjct 47157569 GAAGTACCTGCGCCACTTCTTCCACAGGCATGTGCTCATGCACCTGGGCAGATACATCCC 47157628
Query 177236 CTTCCTGTCTGGTGA 177250
||||| || ||||
Sbjct 47157629 ATTCCTTCCTAGTGA 47157643
Score = 86.0 bits (94), Expect = 7e-12
Identities = 219/327 (67%), Gaps = 15/327 (5%)
Strand=Plus/Minus
Query 176358 CCCGCCCTGTATCTGCTTG-TGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGT--- 176413
||| | ||||| || |||| | ||| || |||| || | || || ||| | |||||
Sbjct 47107449 CCCCCTCTGTA-CTCCTTGGTATTTGTCATTGGCCTGGTTGGAAACATCCTGGTGGTCCT 47107391
Query 176414 GATTATTGT-CATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACT 176472
| | |||| || ||||| || | | |||||| | || | ||| | || | |||
Sbjct 47107390 GGTCCTTGTGCA----ATACAAGAGGCTAAAAAACATGACCAGCATCTACCTCCTGAACC 47107335
Query 176473 TGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGA 176531
|||| || |||||| |||| || || || || | || || ||||| |||| | | ||
Sbjct 47107334 TGGCCATTTCTGACCTGCTCTTCCTGTTCACGCTTCCCTTCTGGATTGACTACAAGTTGA 47107275
Query 176532 ATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTAC 176591
| | |||| ||| ||||||| | || ||||||| | ||| || | | ||||
Sbjct 47107274 AGG----ATGACTGGGTTTTTGGTGATGCCATGTGTAAGATCCTCTCTGGGTTTTATTAC 47107219
Query 176592 ATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCT 176651
| |||||||| || |||||| |||||||||||| || | |||||||| || ||
Sbjct 47107218 ACAGGCTTGTACAGCGAGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCC 47107159
Query 176652 GTTGTCTATGCTGTAACTGCTTTGAGG 176678
| ||| | || || ||| ||| ||
Sbjct 47107158 ATCGTCCACGCCGTGTTTGCCTTGCGG 47107132
Score = 86.0 bits (94), Expect = 7e-12
Identities = 219/327 (67%), Gaps = 15/327 (5%)
Strand=Plus/Minus
Query 9472 CCCGCCCTGTATCTGCTTG-TGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGT--- 9527
||| | ||||| || |||| | ||| || |||| || | || || ||| | |||||
Sbjct 47107449 CCCCCTCTGTA-CTCCTTGGTATTTGTCATTGGCCTGGTTGGAAACATCCTGGTGGTCCT 47107391
Query 9528 GATTATTGT-CATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACT 9586
| | |||| || ||||| || | | |||||| | || | ||| | || | |||
Sbjct 47107390 GGTCCTTGTGCA----ATACAAGAGGCTAAAAAACATGACCAGCATCTACCTCCTGAACC 47107335
Query 9587 TGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGA 9645
|||| || |||||| |||| || || || || | || || ||||| |||| | | ||
Sbjct 47107334 TGGCCATTTCTGACCTGCTCTTCCTGTTCACGCTTCCCTTCTGGATTGACTACAAGTTGA 47107275
Query 9646 ATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTAC 9705
| | |||| ||| ||||||| | || ||||||| | ||| || | | ||||
Sbjct 47107274 AGG----ATGACTGGGTTTTTGGTGATGCCATGTGTAAGATCCTCTCTGGGTTTTATTAC 47107219
Query 9706 ATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCT 9765
| |||||||| || |||||| |||||||||||| || | |||||||| || ||
Sbjct 47107218 ACAGGCTTGTACAGCGAGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCC 47107159
Query 9766 GTTGTCTATGCTGTAACTGCTTTGAGG 9792
| ||| | || || ||| ||| ||
Sbjct 47107158 ATCGTCCACGCCGTGTTTGCCTTGCGG 47107132
>seq848
Length=78004504
Score = 159 bits (176), Expect = 4e-34
Identities = 132/161 (82%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809
|||||||||| ||| || | |||||| || ||||||| ||||||||| |||||||| |||
Sbjct 14422033 AGGCCCGTGATGTGTGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 14422092
Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869
|| || || |||||||| ||||| | |||||||||||||||||| ||||| | | | ||
Sbjct 14422093 ACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 14422152
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910
|| ||||||||||| ||| ||||| || ||||| |||||
Sbjct 14422153 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 14422193
>seq1
Length=228908639
Score = 158 bits (174), Expect = 1e-33
Identities = 133/159 (84%), Gaps = 7/159 (4%)
Strand=Plus/Plus
Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141
||||||| ||||||| ||||||||| || || || ||||| ||||||||||| | ||
Sbjct 186547550 CAGCGCCGTAGCCTCAGCCTGAGGGTCTTCAGATTCTCCCCGAGGGAGTTCACATGCGCC 186547609
Query 138142 TT--TTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACT 138199
|| | |||| || || |||||||| || ||||||||||||||||||||||||||||
Sbjct 186547610 TTGATGTCTGG---GT-CT-TGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACT 186547664
Query 138200 GGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238
||||||||||||||| ||| ||||| |||||||||||||
Sbjct 186547665 GGATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 186547703
Score = 114 bits (126), Expect = 2e-20
Identities = 83/96 (86%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 137921 CTCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACT 137980
|||||||| ||||| | ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 186545277 CTCAGTTTCGTATCTTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACT 186545336
Query 137981 CGCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016
| |||||||| |||||||| ||||| || |||||||
Sbjct 186545337 CACTCATGGCTTTGTAGACGCCTTTCTCTTGGAGCT 186545372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589776517292440
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