Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq168 228 1e-54 seq848 159 4e-34 seq1 158 1e-33 >seq168 Length=201391403 Score = 228 bits (252), Expect = 1e-54 Identities = 607/915 (66%), Gaps = 23/915 (3%) Strand=Plus/Plus Query 9460 GCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATAT 9518 || ||| | || ||| | ||||| || ||||| | || |||| | ||||||||| | Sbjct 47156742 GCCCAGTTCGTGCCCCCGCTGTACTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAATGT 47156800 Query 9519 CTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACT 9578 | |||||||| || |||||| ||||| || | || || | || ||||| | || Sbjct 47156801 GGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACCT 47156860 Query 9579 GTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTA 9638 | | ||| |||| || || ||| |||| || || || || | || || ||||| ||||| Sbjct 47156861 GCTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACTA 47156920 Query 9639 TATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGT 9698 | | | | ||| | ||| |||||| | | ||||||| || ||| || | Sbjct 47156921 TGTCAGGGGG---CATAACTGGGTTTTTGGCCATGGCATGTGTAAGCTCCTCTCGGCGTT 47156977 Query 9699 GTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTA 9758 | | ||| |||||||| || |||||| ||| |||||||| || | |||||||| Sbjct 47156978 TTATCACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTGCTGACGATCGACAGGTA 47157037 Query 9759 TCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATA 9816 || || ||||| ||||||| ||| || ||| | || || || | ||| | Sbjct 47157038 CCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCCC--GGACTGTCACTTTTGGTGTC 47157095 Query 9817 GTTACCTGTGTATGT-ACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTT 9875 | ||| | | ||| |||||| ||||||| | | | || ||||||||| |||| Sbjct 47157096 ATCACCAGCAT-TGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATCTT 47157154 Query 9876 TCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATGT 9934 ||| |||| | | | || | || || | | ||||||||| Sbjct 47157155 CTATGAGATTGAAGA-GTTGTTTGAAGAGACTCTTTGCAGTGTTGTTTACCCAGAGGATA 47157213 Query 9935 CTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGC 9994 | | || ||||||| |||| | | ||| || || ||||| || | | Sbjct 47157214 CAGTATATAGCTGGAGGCATTTCCACACTCTGAGAATGACCATCTTCTGTCTCGTTCTCC 47157273 Query 9995 CTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCA 10054 |||||||| | ||||| |||||||| | ||| |||| || ||| ||||| |||||| Sbjct 47157274 CTCTGCTCGTCATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCCA 47157333 Query 10055 GCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTT 10114 | || || ||||||||||||||| ||||||| ||||||||||||| || | ||| ||| Sbjct 47157334 GTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCGGTGTTTTTCATTT 47157393 Query 10115 TTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA--- 10171 | |||||||||||||| | | | |||| || ||| || ||| | || ||||| Sbjct 47157394 TCTGGACACCCTACAATGTGGCTATCCTTCTCTCTTTCTATCA----ATCCATCTTATTT 47157449 Query 10172 --ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGT 10229 | || | |||| ||||| | ||||| ||| ||||| | ||| | | Sbjct 47157450 GGAAATG-ACTGTGAGCGGAGCAAGCATCTGGACCTGGTCATGCTGGTGACAGAGGTGAT 47157508 Query 10230 AGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAG 10289 |||||| | ||||| ||||| ||||| ||||||||||| || || || |||| ||| | Sbjct 47157509 CGCCTACTCCCACTGCTGCATGAACCCGGTGATCTACGCCTTTGTTGGAGAGAGGTTCCG 47157568 Query 10290 AAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCC 10349 | ||||| |||||||||||||| | ||| ||| |||| ||| |||||||| Sbjct 47157569 GAAGTACCTGCGCCACTTCTTCCACAGGCATGTGCTCATGCACCTGGGCAGATACATCCC 47157628 Query 10350 CTTCCTGTCTGGTGA 10364 ||||| || |||| Sbjct 47157629 ATTCCTTCCTAGTGA 47157643 Score = 228 bits (252), Expect = 1e-54 Identities = 607/915 (66%), Gaps = 23/915 (3%) Strand=Plus/Plus Query 176346 GCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATAT 176404 || ||| | || ||| | ||||| || ||||| | || |||| | ||||||||| | Sbjct 47156742 GCCCAGTTCGTGCCCCCGCTGTACTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAATGT 47156800 Query 176405 CTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACT 176464 | |||||||| || |||||| ||||| || | || || | || ||||| | || Sbjct 47156801 GGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACCT 47156860 Query 176465 GTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTA 176524 | | ||| |||| || || ||| |||| || || || || | || || ||||| ||||| Sbjct 47156861 GCTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACTA 47156920 Query 176525 TATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGT 176584 | | | | ||| | ||| |||||| | | ||||||| || ||| || | Sbjct 47156921 TGTCAGGGGG---CATAACTGGGTTTTTGGCCATGGCATGTGTAAGCTCCTCTCGGCGTT 47156977 Query 176585 GTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTA 176644 | | ||| |||||||| || |||||| ||| |||||||| || | |||||||| Sbjct 47156978 TTATCACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTGCTGACGATCGACAGGTA 47157037 Query 176645 TCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATA 176702 || || ||||| ||||||| ||| || ||| | || || || | ||| | Sbjct 47157038 CCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCCC--GGACTGTCACTTTTGGTGTC 47157095 Query 176703 GTTACCTGTGTATGT-ACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTT 176761 | ||| | | ||| |||||| ||||||| | | | || ||||||||| |||| Sbjct 47157096 ATCACCAGCAT-TGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATCTT 47157154 Query 176762 TCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATGT 176820 ||| |||| | | | || | || || | | ||||||||| Sbjct 47157155 CTATGAGATTGAAGA-GTTGTTTGAAGAGACTCTTTGCAGTGTTGTTTACCCAGAGGATA 47157213 Query 176821 CTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGC 176880 | | || ||||||| |||| | | ||| || || ||||| || | | Sbjct 47157214 CAGTATATAGCTGGAGGCATTTCCACACTCTGAGAATGACCATCTTCTGTCTCGTTCTCC 47157273 Query 176881 CTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCA 176940 |||||||| | ||||| |||||||| | ||| |||| || ||| ||||| |||||| Sbjct 47157274 CTCTGCTCGTCATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCCA 47157333 Query 176941 GCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTT 177000 | || || ||||||||||||||| ||||||| ||||||||||||| || | ||| ||| Sbjct 47157334 GTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCGGTGTTTTTCATTT 47157393 Query 177001 TTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA--- 177057 | |||||||||||||| | | | |||| || ||| || ||| | || ||||| Sbjct 47157394 TCTGGACACCCTACAATGTGGCTATCCTTCTCTCTTTCTATCA----ATCCATCTTATTT 47157449 Query 177058 --ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGT 177115 | || | |||| ||||| | ||||| ||| ||||| | ||| | | Sbjct 47157450 GGAAATG-ACTGTGAGCGGAGCAAGCATCTGGACCTGGTCATGCTGGTGACAGAGGTGAT 47157508 Query 177116 AGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAG 177175 |||||| | ||||| ||||| ||||| ||||||||||| || || || |||| ||| | Sbjct 47157509 CGCCTACTCCCACTGCTGCATGAACCCGGTGATCTACGCCTTTGTTGGAGAGAGGTTCCG 47157568 Query 177176 AAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCC 177235 | ||||| |||||||||||||| | ||| ||| |||| ||| |||||||| Sbjct 47157569 GAAGTACCTGCGCCACTTCTTCCACAGGCATGTGCTCATGCACCTGGGCAGATACATCCC 47157628 Query 177236 CTTCCTGTCTGGTGA 177250 ||||| || |||| Sbjct 47157629 ATTCCTTCCTAGTGA 47157643 Score = 86.0 bits (94), Expect = 7e-12 Identities = 219/327 (67%), Gaps = 15/327 (5%) Strand=Plus/Minus Query 176358 CCCGCCCTGTATCTGCTTG-TGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGT--- 176413 ||| | ||||| || |||| | ||| || |||| || | || || ||| | ||||| Sbjct 47107449 CCCCCTCTGTA-CTCCTTGGTATTTGTCATTGGCCTGGTTGGAAACATCCTGGTGGTCCT 47107391 Query 176414 GATTATTGT-CATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACT 176472 | | |||| || ||||| || | | |||||| | || | ||| | || | ||| Sbjct 47107390 GGTCCTTGTGCA----ATACAAGAGGCTAAAAAACATGACCAGCATCTACCTCCTGAACC 47107335 Query 176473 TGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGA 176531 |||| || |||||| |||| || || || || | || || ||||| |||| | | || Sbjct 47107334 TGGCCATTTCTGACCTGCTCTTCCTGTTCACGCTTCCCTTCTGGATTGACTACAAGTTGA 47107275 Query 176532 ATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTAC 176591 | | |||| ||| ||||||| | || ||||||| | ||| || | | |||| Sbjct 47107274 AGG----ATGACTGGGTTTTTGGTGATGCCATGTGTAAGATCCTCTCTGGGTTTTATTAC 47107219 Query 176592 ATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCT 176651 | |||||||| || |||||| |||||||||||| || | |||||||| || || Sbjct 47107218 ACAGGCTTGTACAGCGAGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCC 47107159 Query 176652 GTTGTCTATGCTGTAACTGCTTTGAGG 176678 | ||| | || || ||| ||| || Sbjct 47107158 ATCGTCCACGCCGTGTTTGCCTTGCGG 47107132 Score = 86.0 bits (94), Expect = 7e-12 Identities = 219/327 (67%), Gaps = 15/327 (5%) Strand=Plus/Minus Query 9472 CCCGCCCTGTATCTGCTTG-TGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGT--- 9527 ||| | ||||| || |||| | ||| || |||| || | || || ||| | ||||| Sbjct 47107449 CCCCCTCTGTA-CTCCTTGGTATTTGTCATTGGCCTGGTTGGAAACATCCTGGTGGTCCT 47107391 Query 9528 GATTATTGT-CATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACT 9586 | | |||| || ||||| || | | |||||| | || | ||| | || | ||| Sbjct 47107390 GGTCCTTGTGCA----ATACAAGAGGCTAAAAAACATGACCAGCATCTACCTCCTGAACC 47107335 Query 9587 TGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGA 9645 |||| || |||||| |||| || || || || | || || ||||| |||| | | || Sbjct 47107334 TGGCCATTTCTGACCTGCTCTTCCTGTTCACGCTTCCCTTCTGGATTGACTACAAGTTGA 47107275 Query 9646 ATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTAC 9705 | | |||| ||| ||||||| | || ||||||| | ||| || | | |||| Sbjct 47107274 AGG----ATGACTGGGTTTTTGGTGATGCCATGTGTAAGATCCTCTCTGGGTTTTATTAC 47107219 Query 9706 ATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCT 9765 | |||||||| || |||||| |||||||||||| || | |||||||| || || Sbjct 47107218 ACAGGCTTGTACAGCGAGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCC 47107159 Query 9766 GTTGTCTATGCTGTAACTGCTTTGAGG 9792 | ||| | || || ||| ||| || Sbjct 47107158 ATCGTCCACGCCGTGTTTGCCTTGCGG 47107132 >seq848 Length=78004504 Score = 159 bits (176), Expect = 4e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| || | |||||| || ||||||| ||||||||| |||||||| ||| Sbjct 14422033 AGGCCCGTGATGTGTGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 14422092 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| ||||| | |||||||||||||||||| ||||| | | | || Sbjct 14422093 ACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 14422152 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| ||| ||||| || ||||| ||||| Sbjct 14422153 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 14422193 >seq1 Length=228908639 Score = 158 bits (174), Expect = 1e-33 Identities = 133/159 (84%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| ||||||| ||||||||| || || || ||||| ||||||||||| | || Sbjct 186547550 CAGCGCCGTAGCCTCAGCCTGAGGGTCTTCAGATTCTCCCCGAGGGAGTTCACATGCGCC 186547609 Query 138142 TT--TTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACT 138199 || | |||| || || |||||||| || |||||||||||||||||||||||||||| Sbjct 186547610 TTGATGTCTGG---GT-CT-TGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACT 186547664 Query 138200 GGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||||||| ||| ||||| ||||||||||||| Sbjct 186547665 GGATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 186547703 Score = 114 bits (126), Expect = 2e-20 Identities = 83/96 (86%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 137921 CTCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACT 137980 |||||||| ||||| | ||||||||||| ||||||||||| |||||||||||||||| Sbjct 186545277 CTCAGTTTCGTATCTTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACT 186545336 Query 137981 CGCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 | |||||||| |||||||| ||||| || ||||||| Sbjct 186545337 CACTCATGGCTTTGTAGACGCCTTTCTCTTGGAGCT 186545372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589776517292440