Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq931 482 3e-131 seq892 452 5e-122 seq168 315 9e-81 seq235 120 4e-22 >seq931 Length=156331669 Score = 482 bits (534), Expect = 3e-131 Identities = 459/587 (78%), Gaps = 0/587 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| || |||| ||||| | | | | ||||||| ||||| ||||||||||||| Sbjct 13166319 AGCAGGGCTTCTGTGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGT 13166378 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | |||| ||||||| |||||| ||||||||| ||||||||||| || |||||||| Sbjct 13166379 AGGGGCACACCGTCAGGGCCCACCGGGAACTTCTCAAAGTTCCAGGCAACATCGTTGCGA 13166438 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| ||||||| ||||||| ||| |||| | ||||||||| Sbjct 13166439 CACACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATAAGCGCAGTGGCGTCGTCGCTG 13166498 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || |||||||||| || |||||||| ||||| | || |||| |||||||| ||| Sbjct 13166499 GGGGCTGGCAGGGCCTTCCGCAGGAAGGCAAAGAGTGTGTGCGCCCCCGCACCGTTCACC 13166558 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 || | ||||||||||||||| ||||| |||||||| || ||||| ||||||| ||| Sbjct 13166559 TCACCCTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCGGACGTACTTG 13166618 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 |||||| || ||||| | |||| |||||| ||||| || || |||||||| |||||| Sbjct 13166619 AGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCTGATGCCCAAACTGGTTGCACGGG 13166678 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || || ||||| ||||| ||| | | ||| |||||||||||||||||||||||||| ||| Sbjct 13166679 AAGCCGAGCACCACCAGGCCCTGGGGTCCGAGGCGCCGCTGCAGCTCGTTCATCTGGGTG 13166738 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 || |||||||||||| | |||||||| ||||| || |||||||| || | ||| |||| Sbjct 13166739 TAGTCCCGGACCGTGGTGCCTCAGAGAGACGCCACATTCTCGATAAGTAGTACCTTGCCC 13166798 Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 || | | |||| | ||||||||| || || |||| | |||||| || |||||||| ||| Sbjct 13166799 CGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCGGCCAGCGGGCGCGCCGAGAAGGCATAC 13166858 Query 83597 ACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCGCGTACTTGGCACA 83643 || || || | | ||||| || || | || || || |||| || Sbjct 13166859 ACCGACTGGGCCGCCGCCGCCGCTGGCCGAGCAGCACACATGGCGCA 13166905 >seq892 Length=37891338 Score = 452 bits (500), Expect = 5e-122 Identities = 444/568 (78%), Gaps = 4/568 (1%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| |||| ||||||| Sbjct 18216105 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTATACCTGCAT 18216164 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| ||||||| ||||||| ||||||||| ||||||||||| || |||||||| Sbjct 18216165 ACAGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAACATCGTTGCGA 18216224 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| ||||||| ||||| | ||| |||| | ||||||||| Sbjct 18216225 CACACCGGAGACCAGGTGATGAGCTTGGGGTGGGTCATGAGCTCAGTGGCGTCGTCGCTG 18216284 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||| |||||| || || |||||| |||| || || |||| |||||||| ||| Sbjct 18216285 GGGGCTGGC-CGGCCTCCCGCAGAAAGGCGGAGAGAGGGTGCGCCCCCGCACCGTTCACC 18216343 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 || |||||||| |||||||| ||| | |||||||| || ||||| |||||| ||| Sbjct 18216344 TCACACTTCTCCAAGAGCATGAAGCTGGGCTCGAACCCACCACCAGGTTGGACGTACTTG 18216403 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 |||||| || ||||| | |||| |||||| ||||| || || |||||||| || ||| Sbjct 18216404 AGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCTGATGCCCAAACTGGTTGCAAGGG 18216463 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || |||||||| ||||| ||||| | || ||||| |||||| ||||||||||||| ||| Sbjct 18216464 AAGCCAAGCACCACCAGGCCCCG-GGGCCGAGGCGTCGCTGCGGCTCGTTCATCTGGGTG 18216522 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 || ||||||||| || | |||||||||||||| || |||||||| |||| ||| |||| Sbjct 18216523 TAGTCCCGGACCTTGGTGCCTCAGAGGGACGCCACATTCTCGATAAGCAGTACCTTGCCC 18216582 Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 || | | |||| | ||||||||| || || |||| | |||||| || || ||||| ||| Sbjct 18216583 CGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCGGCCAGCGGGCGCGCGGAAAAGGCTTAC 18216642 Query 83597 ACAGATCTGGTC-TCTGCCGCGGCAAGC 83623 || || |||| | | ||||| || ||| Sbjct 18216643 ACCGA-CTGGGCAGCCGCCGCCGCTAGC 18216669 >seq168 Length=201391403 Score = 315 bits (348), Expect = 9e-81 Identities = 272/337 (81%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| ||||||||||||| Sbjct 50339473 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGT 50339532 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | |||| ||||||| ||||||| ||||||||| ||||||||||| || |||||||| Sbjct 50339533 AGGGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAACATCGTTGCGA 50339592 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| ||||||||| ||||||| ||||||| ||| |||| | ||||||||| Sbjct 50339593 CACACCGGAGACCAGATGATGAGCTTGGGGTCGGTCATAAGCGCAGTGGCGTCGTCGCTG 50339652 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||||||||| || |||||||||||||| || || |||| |||||||| ||| Sbjct 50339653 GGGGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGCCCCCGCACCGTTCACC 50339712 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| ||||| |||||||| || ||||| ||||||| ||| Sbjct 50339713 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGCCGGACGTACTTG 50339772 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||||| || ||||| | |||| |||||| |||| Sbjct 50339773 AGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCT 50339809 >seq235 Length=173266796 Score = 120 bits (132), Expect = 4e-22 Identities = 206/291 (71%), Gaps = 15/291 (5%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| || |||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 109199635 GCAGCTACGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 109199577 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 109199576 TGGTGCACCTGTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 109199517 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| ||| | | |||| ||||| Sbjct 109199516 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCCTCCCGCATCAAGCTCATCCGCCACTAC 109199458 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCCT 50643 |||||| |||| |||| ||||| ||||| ||||| |||| | ||||| | Sbjct 109199457 GTGCAGCTGCTCTACCCA----CGCGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGT 109199402 Query 50644 GGCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || ||||| ||||||||||||||||| | |||||| || |||||| Sbjct 109199401 GGGCAAACTGGATGAGCGCTGCCGGCGCCG--GGACACGGAGCAAAGGCGC 109199353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608486990918440