Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq646 145 7e-30 seq168 113 4e-20 seq219 111 1e-19 seq389 109 5e-19 seq1 105 6e-18 seq287 102 7e-17 seq728 100 2e-16 seq773 96.9 3e-15 seq377 89.7 4e-13 seq786 82.4 7e-11 >seq646 Length=133456746 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | ||||||||||| || ||||||||||| || |||||| ||| || Sbjct 124982955 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGCCCATCTTC 124983014 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||||||||| |||| || | |||||| || ||||| ||||| ||||| ||| Sbjct 124983015 CAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTG 124983074 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | |||| |||||| || ||||||||||| ||| | || || Sbjct 124983075 GATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 124983134 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| || || || |||||||| Sbjct 124983135 ACCAGTCAGAGTCTTCACGAAGATCTGCAT 124983164 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || |||||||| || || |||||| |||||| Sbjct 124982499 CACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTC 124982558 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| |||||||| |||| | | |||||| || ||||| ||||| ||||||||| Sbjct 124982559 CAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 124982618 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | |||| |||||| || ||||||||||| ||| | || || Sbjct 124982619 GATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 124982678 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 124982679 ACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982708 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | ||||||||||| || |||||||| || || ||||| ||| || Sbjct 124982271 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTC 124982330 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||| || |||| | | |||||| || ||||| ||||| ||||||||| Sbjct 124982331 CAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 124982390 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | |||| |||||| || ||||||||||| ||| | || || Sbjct 124982391 GATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 124982450 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 124982451 ACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982480 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | | |||||||| || ||||| || || | | || | ||| Sbjct 115608239 CAGCACCAGGTGCAGGATGGACTCTTTCTGGATGTTCTAGTCTGAGAGACTGTGGCCATC 115608298 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| || | | || |||| |||||| || || | |||||||||||||| Sbjct 115608299 CTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGGTCAGGCAGGATGCCCTCCTTGTC 115608358 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| ||| || | || | |||||| || | | ||||| | ||| | || Sbjct 115608359 TTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCCCCACCTCAAGGGTGATGGT 115608418 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || | ||| |||||||| Sbjct 115608419 CTTGCCCGTGAGGGTGTTCATAAAGATCTGCAT 115608451 >seq168 Length=201391403 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | |||||||| |||||||| ||||| || Sbjct 5653901 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 5653842 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || ||||| || ||||| |||| || | ||||||||| ||||| Sbjct 5653841 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 5653782 Query 118631 TATGCCCTCCTTGTC-TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 || || ||||| || |||| || |||| | | ||| | || |||| | || | Sbjct 5653781 AATTCCTTCCTTATCCTGTATCTTGGCCTTTA-CATTTTCTATCGTATCCGAGGGTTCAA 5653723 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||| | || || || || || ||||| || ||||||||||| Sbjct 5653722 CCTCGAGGGTGATGGTCTTTCCCGTAAGGGTTTTCACGAAAATCTGCAT 5653674 >seq219 Length=165317712 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| || | |||||| ||| || Sbjct 62366369 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 62366428 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| |||||||| ||||| || || ||| Sbjct 62366429 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCTTGG 62366488 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| || ||| ||||| | || | || ||| Sbjct 62366489 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTG 62366548 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 62366549 CCGGTCAGGGTCTTCACGAAGATCTGCAT 62366577 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || | ||| | ||| || Sbjct 57062642 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACCGCCATCTTCC 57062701 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||||||| | || ||||| || || ||| Sbjct 57062702 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGTGGGGGATGCCTTCTTTATCTTGG 57062761 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| || ||| || || | ||| | || ||| Sbjct 57062762 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 57062821 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 57062822 CCGGTCAGGGTCTTCACGAAGATCTGCAT 57062850 >seq389 Length=121655618 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| || | || ||| || |||||||| || | | |||| ||| Sbjct 27659238 CAGCACCAGGTGCGGGGTGGGCTGTTTCTGGATGTTGTAGTCTGAGAGAATGCGGCCATC 27659297 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| | || | || ||||||||||| || || ||||| ||||||||||| Sbjct 27659298 CTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGGGGTATACCCTCCTTGTC 27659357 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| || || | || | |||||| || ||||||||| | ||| | || Sbjct 27659358 TTGAATTTTCGCATTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 27659417 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| |||||||| Sbjct 27659418 CTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 27659450 >seq1 Length=228908639 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | |||||||| |||||||| ||||| || Sbjct 172116178 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 172116119 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || ||||| || ||||| |||| || | ||||||||| ||||| Sbjct 172116118 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 172116059 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | || |||| | || | Sbjct 172116058 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAGC 172115999 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | || || || || || ||||| || ||||||||||| Sbjct 172115998 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 172115951 >seq287 Length=159110946 Score = 102 bits (112), Expect = 7e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604 |||||||| || |||||| | || | |||||| |||||| |||||||| || || Sbjct 25710651 GACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCA 25710710 Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664 | || ||||| ||||| || | || ||||||||||||||| ||||| || || Sbjct 25710711 AATATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTTGTCTCGAATTTCGGCCTTGACA 25710770 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | || |||||| || ||||||||||| ||| | || ||||| || || || || Sbjct 25710771 TTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTC 25710830 Query 118725 ACAAAAATCTGCAT 118738 |||| |||||||| Sbjct 25710831 GCAAAGATCTGCAT 25710844 >seq728 Length=90977943 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | || |||||||| || |||||||| | | |||| | ||| Sbjct 41396674 CAGCACCAGGTTTAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGTGGCCATC 41396615 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||| |||| ||||| | || ||| ||||||| | || || || ||||||||||| Sbjct 41396614 CTCCAGCCGTTTCCCAGCAAATATCAGATGCTGCTGGTAAGGTGGGATACCCTCCTTGTC 41396555 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 |||||| ||| || | | | |||||| ||| || |||||| | ||| | || Sbjct 41396554 CTGAATTTTGGCTTTGACATTCTAAATGGTGTCGGTGGGCTTGACCTCAAGGGTGATGGT 41396495 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| |||||||| Sbjct 41396494 CTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 41396462 >seq773 Length=81384781 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| || || |||||||| |||||| | ||||| || Sbjct 51769182 ACCACCACGAAGTCTCAACACAAAATGAGGAGTAGACTCCTTTTGACTATTGTAGTCAGA 51769241 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| | ||| || ||||| || ||||| |||| || | ||||||||| ||||| Sbjct 51769242 CAAAGTACATCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 51769301 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | || |||| | || | Sbjct 51769302 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAGC 51769361 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | || || || || || ||||| || ||||||||||| Sbjct 51769362 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 51769409 >seq377 Length=146757320 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/213 (68%), Gaps = 18/213 (8%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| || |||||||| || | |||||| ||| Sbjct 124616674 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 124616615 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| || || || ||||||||||| || || || |||||||||||||| Sbjct 124616614 CTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 124616555 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 |||||| || || || ||||||||| | ||| | || Sbjct 124616554 CTGAATTTT------------------GGCGTTACTGGGCTCGACCTCAAGGGTGATGGT 124616513 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| |||||||| Sbjct 124616512 CTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 124616480 >seq786 Length=95888799 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| || || | ||||||||||||||||| ||||| | Sbjct 10327976 ACCACCACGCAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGA 10327917 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| | ||| || || || || ||||| |||| | | |||||||| ||||| Sbjct 10327916 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGG 10327857 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCC-GTGCTCTCGA 118689 || || ||||| || || || || || | ||| | || ||| || | || | Sbjct 10327856 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAATGGT-TCAA 10327798 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || ||| || || || || || ||||| || ||||||||||| Sbjct 10327797 CCTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 10327749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433615148404012