Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq646 145 7e-30
seq168 113 4e-20
seq219 111 1e-19
seq389 109 5e-19
seq1 105 6e-18
seq287 102 7e-17
seq728 100 2e-16
seq773 96.9 3e-15
seq377 89.7 4e-13
seq786 82.4 7e-11
>seq646
Length=133456746
Score = 145 bits (160), Expect = 7e-30
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | ||||||||||| || ||||||||||| || |||||| ||| ||
Sbjct 124982955 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGCCCATCTTC 124983014
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||||||||| |||| || | |||||| || ||||| ||||| ||||| |||
Sbjct 124983015 CAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTG 124983074
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| ||| || || | |||| |||||| || ||||||||||| ||| | || ||
Sbjct 124983075 GATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 124983134
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||||||| || || || ||||||||
Sbjct 124983135 ACCAGTCAGAGTCTTCACGAAGATCTGCAT 124983164
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || |||||||| || |||||||| || || |||||| ||||||
Sbjct 124982499 CACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTC 124982558
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| |||||||| |||| | | |||||| || ||||| ||||| |||||||||
Sbjct 124982559 CAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 124982618
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| ||| || || | |||| |||||| || ||||||||||| ||| | || ||
Sbjct 124982619 GATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 124982678
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| || || || || ||||||||
Sbjct 124982679 ACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982708
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | ||||||||||| || |||||||| || || ||||| ||| ||
Sbjct 124982271 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTC 124982330
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| ||||| || |||| | | |||||| || ||||| ||||| |||||||||
Sbjct 124982331 CAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 124982390
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| ||| || || | |||| |||||| || ||||||||||| ||| | || ||
Sbjct 124982391 GATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 124982450
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| || || || || ||||||||
Sbjct 124982451 ACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982480
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||||| ||| | | |||||||| || ||||| || || | | || | |||
Sbjct 115608239 CAGCACCAGGTGCAGGATGGACTCTTTCTGGATGTTCTAGTCTGAGAGACTGTGGCCATC 115608298
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||| |||||||| || | | || |||| |||||| || || | ||||||||||||||
Sbjct 115608299 CTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGGTCAGGCAGGATGCCCTCCTTGTC 115608358
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
| ||||| ||| || | || | |||||| || | | ||||| | ||| | ||
Sbjct 115608359 TTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCCCCACCTCAAGGGTGATGGT 115608418
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || || || || | ||| ||||||||
Sbjct 115608419 CTTGCCCGTGAGGGTGTTCATAAAGATCTGCAT 115608451
>seq168
Length=201391403
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||||||| | || | |||||||| |||||||| ||||| ||
Sbjct 5653901 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 5653842
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||| || ||| || ||||| || ||||| |||| || | ||||||||| |||||
Sbjct 5653841 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 5653782
Query 118631 TATGCCCTCCTTGTC-TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
|| || ||||| || |||| || |||| | | ||| | || |||| | || |
Sbjct 5653781 AATTCCTTCCTTATCCTGTATCTTGGCCTTTA-CATTTTCTATCGTATCCGAGGGTTCAA 5653723
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||| ||| | || || || || || ||||| || |||||||||||
Sbjct 5653722 CCTCGAGGGTGATGGTCTTTCCCGTAAGGGTTTTCACGAAAATCTGCAT 5653674
>seq219
Length=165317712
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || |||||||| || |||||||| || | |||||| ||| ||
Sbjct 62366369 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 62366428
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || || ||||||| | |||||| |||||||| ||||| || || |||
Sbjct 62366429 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCTTGG 62366488
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | ||||| |||||| || ||| ||||| | || | || |||
Sbjct 62366489 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTG 62366548
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||||| || || || || ||||||||
Sbjct 62366549 CCGGTCAGGGTCTTCACGAAGATCTGCAT 62366577
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || ||||| || || |||||||| || | ||| | ||| ||
Sbjct 57062642 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACCGCCATCTTCC 57062701
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || || ||||||| | |||||||||| | || ||||| || || |||
Sbjct 57062702 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGTGGGGGATGCCTTCTTTATCTTGG 57062761
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | ||||| |||||| || ||| || || | ||| | || |||
Sbjct 57062762 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 57062821
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||||| || || || || ||||||||
Sbjct 57062822 CCGGTCAGGGTCTTCACGAAGATCTGCAT 57062850
>seq389
Length=121655618
Score = 109 bits (120), Expect = 5e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||||| ||| || | || ||| || |||||||| || | | |||| |||
Sbjct 27659238 CAGCACCAGGTGCGGGGTGGGCTGTTTCTGGATGTTGTAGTCTGAGAGAATGCGGCCATC 27659297
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||| |||||||| | || | || ||||||||||| || || ||||| |||||||||||
Sbjct 27659298 CTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGGGGTATACCCTCCTTGTC 27659357
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
| |||||| || || | || | |||||| || ||||||||| | ||| | ||
Sbjct 27659358 TTGAATTTTCGCATTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 27659417
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || || || || ||||| ||||||||
Sbjct 27659418 CTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 27659450
>seq1
Length=228908639
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||||||| | || | |||||||| |||||||| ||||| ||
Sbjct 172116178 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 172116119
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||| || ||| || ||||| || ||||| |||| || | ||||||||| |||||
Sbjct 172116118 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 172116059
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||| || || || || || | ||| | || |||| | || |
Sbjct 172116058 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAGC 172115999
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| ||| | || || || || || ||||| || |||||||||||
Sbjct 172115998 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 172115951
>seq287
Length=159110946
Score = 102 bits (112), Expect = 7e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604
|||||||| || |||||| | || | |||||| |||||| |||||||| || ||
Sbjct 25710651 GACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCA 25710710
Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664
| || ||||| ||||| || | || ||||||||||||||| ||||| || ||
Sbjct 25710711 AATATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTTGTCTCGAATTTCGGCCTTGACA 25710770
Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724
| || |||||| || ||||||||||| ||| | || ||||| || || || ||
Sbjct 25710771 TTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTC 25710830
Query 118725 ACAAAAATCTGCAT 118738
|||| ||||||||
Sbjct 25710831 GCAAAGATCTGCAT 25710844
>seq728
Length=90977943
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||||| || | || |||||||| || |||||||| | | |||| | |||
Sbjct 41396674 CAGCACCAGGTTTAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGTGGCCATC 41396615
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||| ||| |||| ||||| | || ||| ||||||| | || || || |||||||||||
Sbjct 41396614 CTCCAGCCGTTTCCCAGCAAATATCAGATGCTGCTGGTAAGGTGGGATACCCTCCTTGTC 41396555
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|||||| ||| || | | | |||||| ||| || |||||| | ||| | ||
Sbjct 41396554 CTGAATTTTGGCTTTGACATTCTAAATGGTGTCGGTGGGCTTGACCTCAAGGGTGATGGT 41396495
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || || || || ||||| ||||||||
Sbjct 41396494 CTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 41396462
>seq773
Length=81384781
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||||||| || || |||||||| |||||| | ||||| ||
Sbjct 51769182 ACCACCACGAAGTCTCAACACAAAATGAGGAGTAGACTCCTTTTGACTATTGTAGTCAGA 51769241
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||| | ||| || ||||| || ||||| |||| || | ||||||||| |||||
Sbjct 51769242 CAAAGTACATCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 51769301
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||| || || || || || | ||| | || |||| | || |
Sbjct 51769302 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAGC 51769361
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| ||| | || || || || || ||||| || |||||||||||
Sbjct 51769362 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 51769409
>seq377
Length=146757320
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/213 (68%), Gaps = 18/213 (8%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||||| ||| | || |||||||| || |||||||| || | |||||| |||
Sbjct 124616674 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 124616615
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||| |||||||| || || || ||||||||||| || || || ||||||||||||||
Sbjct 124616614 CTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 124616555
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|||||| || || || ||||||||| | ||| | ||
Sbjct 124616554 CTGAATTTT------------------GGCGTTACTGGGCTCGACCTCAAGGGTGATGGT 124616513
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || || || || ||||| ||||||||
Sbjct 124616512 CTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 124616480
>seq786
Length=95888799
Score = 82.4 bits (90), Expect = 7e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||||||| || || | ||||||||||||||||| ||||| |
Sbjct 10327976 ACCACCACGCAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGA 10327917
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||| | ||| || || || || ||||| |||| | | |||||||| |||||
Sbjct 10327916 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGG 10327857
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCC-GTGCTCTCGA 118689
|| || ||||| || || || || || | ||| | || ||| || | || |
Sbjct 10327856 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAATGGT-TCAA 10327798
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| || ||| || || || || || ||||| || |||||||||||
Sbjct 10327797 CCTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 10327749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433615148404012
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