Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq235 105 8e-18 seq219 105 8e-18 seq786 100 3e-16 seq646 100 3e-16 seq1 100 3e-16 seq24 98.7 1e-15 seq389 89.7 6e-13 >seq235 Length=173266796 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||||||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 28083011 TTTTCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 28082952 Query 60122 ACTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 28082951 GCTATACTAACGAGGA 28082936 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 28060303 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 28060244 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 28060243 TACTAACGAGGA 28060232 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 28167901 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 28167960 Query 60125 ATACTACCGAGGA 60137 |||| | |||||| Sbjct 28167961 ATACCAACGAGGA 28167973 >seq219 Length=165317712 Score = 105 bits (116), Expect = 8e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||||| |||| |||| || |||||| || || ||||| |||| Sbjct 62366807 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 62366866 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 62366867 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 62366926 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| ||| ||| || || | | | | ||||| || | ||||| Sbjct 62366927 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 62366986 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || | |||||||| ||||| || || || || || ||||| |||||||| || Sbjct 62366987 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTTGAC 62367039 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||||| |||| |||| || |||||| || || ||||| |||| Sbjct 62366579 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 62366638 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 62366639 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 62366698 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || || ||| ||| || || | | | | ||||| || | ||||| Sbjct 62366699 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 62366758 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 62366759 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 62366805 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||| Sbjct 125979986 CTCCTCGTCAGGGAATCGAACCCCAGTCTCCCGTGTGACAGGCGGGGATACTCACCACTA 125980045 Query 60126 TACTACCGAGGA 60137 ||||| ||||| Sbjct 125980046 TACTAATGAGGA 125980057 Score = 82.4 bits (90), Expect = 9e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||| |||| || ||| || || || ||||| |||| ||||| || | Sbjct 62366363 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 62366422 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || ||||| | ||||||||||| || | || || || Sbjct 62366423 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTA 62366482 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || ||| || || | | | | ||||| || | ||||| || | |||||| Sbjct 62366483 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 62366542 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || ||||| || ||||| ||||| Sbjct 62366543 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 62366577 >seq786 Length=95888799 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 8250374 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 8250433 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 8250434 ATACTAACGAGGA 8250446 >seq646 Length=133456746 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 124999151 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 124999210 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 124999211 ATACTAACGAGGA 124999223 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 95749567 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 95749508 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 95749507 TACTAACGAGGA 95749496 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 125010226 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 125010285 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 125010286 TACTAACGAGGA 125010297 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 98238554 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 98238495 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 98238494 TACTAACGAGGA 98238483 >seq1 Length=228908639 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| |||| ||||| | | || ||||||||| | || || || Sbjct 197684024 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCTAGCTGCATGCCTGCAAA 197684083 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||||| | | || ||||| |||| ||| || || | | Sbjct 197684084 GATGAGCCTCTGCTGGTCGGGAAGGATGCCTTCCTTATCCAGGATATTGGCCTTCACATT 197684143 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || | ||||| |||| |||||||| ||||| || |||||||| || Sbjct 197684144 TTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCAC 197684203 Query 43172 AAAGATTTGCATTTTTAC 43189 ||||| |||||||| || Sbjct 197684204 GAAGATCTGCATTTTGAC 197684221 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 140391484 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 140391543 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 140391544 TACTAACGAGGA 140391555 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 140398956 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 140399015 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 140399016 TACTAACGAGGA 140399027 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||| | || |||||||||||||||||| |||| || ||| || | || Sbjct 172116163 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 172116104 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || |||||||| ||||| || || |||| |||||| || | || | | ||||| || Sbjct 172116103 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 172116044 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || || | | | | ||| || | ||| | |||| |||||||| Sbjct 172116043 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAGCCTCGAGGGTGATGGT 172115984 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || ||||| || || || || || || ||||||||| Sbjct 172115983 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTT 172115947 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | || |||| ||||| |||||||| |||||||||||| |||||||||||| Sbjct 140462390 TCTCCCCGTCGGGAAATCAAACCCCGGTCTCCCCCGTGACAGGCGGGGATACTCACCACT 140462331 Query 60125 ATACTACCGAG 60135 |||||| |||| Sbjct 140462330 ATACTAACGAG 140462320 >seq24 Length=5769 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3757 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3816 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3817 TACTAACGAGGA 3828 >seq389 Length=121655618 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| || ||| ||||| ||| ||| || || || || ||||| || | Sbjct 27659224 CCACCTCGTAGGTGCAGCACCAGGTGCGGGGTGGGCTGTTTCTGGATGTTGTAGTCTGAG 27659283 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||| | || | || || ||||| || | || ||||| || ||||||||||| | || Sbjct 27659284 AGAATGCGGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGGGGT 27659343 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||||| | ||| |||| | |||| || | | ||||| || | || || Sbjct 27659344 ATACCCTCCTTGT-CTTGAATTTTCGCATTGACATTCTCAATGGTGTCACTGGGCTCGAC 27659402 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| |||||||| || ||||| |||||||| ||||| Sbjct 27659403 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 27659450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571526609171080