Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq235 102 1e-16 seq860 96.9 5e-15 seq786 95.1 2e-14 seq168 93.3 6e-14 seq1 93.3 6e-14 seq773 89.7 8e-13 seq931 86.0 9e-12 >seq235 Length=173266796 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||| | || || || Sbjct 115827920 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGAATCCTTTTGA-ATACTGTAGTCAGA 115827862 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| ||||||||||| |||| |||||||||||| ||||| Sbjct 115827861 CAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 115827802 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 115827801 AATTCCTTCCTTATCCTG 115827784 >seq860 Length=57935654 Score = 96.9 bits (106), Expect = 5e-15 Identities = 148/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| |||||||||| | || ||||||| || |||| || ||| ||| | ||| Sbjct 51797876 TTCCTTCTGGATGTTATGGA-GAGTAGCTCCAAGGTCTGGCTTGGCTGCAAAACACTTTG 51797934 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 ||||| | |||||||| || | || |||||||||||||||||||| || || || | | Sbjct 51797935 TTGATGTAGGAGCTGGTGTCACAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTCT 51797994 Query 10549 TTAATCATTCTAATGAAGATTTTATAAT-AAATAGAGGAGATAGAATATCTCAATTAATA 10607 ||||| || || ||| | ||| | | ||| | ||| ||| |||| | || | || Sbjct 51797995 TTAATTTTTGCAAAGAAAAGTTTGAAGTCAAAAAAAGGTGATCGAATTGCACAGCTCATT 51798054 Query 10608 TGTGAAAAAATTTTAT-ATCCTAAAAT 10633 |||||| ||||| | |||| |||| Sbjct 51798055 TGTGAACGGATTTTTTAATCCAGAAAT 51798081 >seq786 Length=95888799 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || || ||||| | |||||| ||||| ||||| || | || Sbjct 10327975 CCACCACGCAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGAC 10327916 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| ||| |||||||||||| |||||| Sbjct 10327915 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGA 10327856 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 10327855 ATTCCTTCCTTATCCTG 10327839 >seq168 Length=201391403 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 5653900 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 5653842 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | || || |||||||| |||| ||| |||||||| ||||| Sbjct 5653841 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 5653782 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 5653781 AATTCCTTCCTTATCCTG 5653764 >seq1 Length=228908639 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 172116177 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 172116119 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | || || |||||||| |||| ||| |||||||| ||||| Sbjct 172116118 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 172116059 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 172116058 AATTCCTTCCTTATCCTG 172116041 >seq773 Length=81384781 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || ||||| |||||| || ||| || |||| || || || Sbjct 51769183 CCACCACGAAGTCTCAACACAAAATGAGGAGTAGACTCCTTTTGAC-TATTGTAGTCAGA 51769241 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | || || |||||||| |||| ||| |||||||| ||||| Sbjct 51769242 CAAAGTACATCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 51769301 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 51769302 AATTCCTTCCTTATCCTG 51769319 >seq931 Length=156331669 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 146052 CACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAA 146110 |||| | |||||| || || | ||| | ||||| || ||| || || || | || || Sbjct 3273478 CACCACAAAGTCTCAACACAAGATGAAGAGTAGGCTCCTTTTGA-ATGTTGCAGTCAGAC 3273420 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| |||||| Sbjct 3273419 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 3273360 Query 146171 ATTCCTTCTTTATC 146184 |||||||| ||||| Sbjct 3273359 ATTCCTTCCTTATC 3273346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743148028709120