Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq219 116 2e-21
seq389 98.7 6e-16
seq646 96.9 2e-15
seq126 87.8 1e-12
seq728 84.2 1e-11
>seq219
Length=165317712
Score = 116 bits (128), Expect = 2e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | ||| | ||| |||||||| | || || ||||| ||||||||||| ||
Sbjct 62366807 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 62366866
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || |||| |||||||||||| || ||||||| |||||||||| |||
Sbjct 62366867 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 62366926
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||| || ||||| ||| | || | || | || | | || ||
Sbjct 62366927 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 62366986
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| |||||||| || |||||||| |||||||||||
Sbjct 62366987 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCAT 62367033
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | ||| | ||| |||||||| | || |||||||| ||||||||||| ||
Sbjct 62366351 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 62366410
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || |||| |||||||||||| || ||||||| |||||||||| ||
Sbjct 62366411 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 62366470
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || || || || ||||| ||| | || | || | || | | || ||
Sbjct 62366471 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 62366530
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| |||||||| || || ||||| |||||||||||
Sbjct 62366531 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 62366577
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | ||| | ||| |||||||| | || || ||||| ||||||||||| ||
Sbjct 57062624 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 57062683
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | | || |||| |||||||||||| || ||||||| |||||| ||| |||
Sbjct 57062684 AGAGTACCGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGTGGGGG 57062743
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || || || || ||||| ||| | || | || | || | | || ||
Sbjct 57062744 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 57062803
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| |||||||| || || ||||| |||||||||||
Sbjct 57062804 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 57062850
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | ||| | ||| |||||||| | || || ||||| ||||||||||| ||
Sbjct 62366579 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 62366638
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || |||| |||||||||||| || ||||||| |||||||||| ||
Sbjct 62366639 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 62366698
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || || || || ||||| ||| | || | || | || | | || ||
Sbjct 62366699 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 62366758
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| ||||| || || || ||||| |||||||||||
Sbjct 62366759 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 62366805
>seq389
Length=121655618
Score = 98.7 bits (108), Expect = 6e-16
Identities = 154/218 (71%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
|||||||||||| || | |||||| ||||||||||| || || ||| | ||
Sbjct 27659238 CAGCACCAGGTGCGGGGTGGGCTGTTTCTGGATGTTGTAGTCTGAGAGAATGCGGCCATC 27659297
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| ||| |||| || || || || ||||||||||| ||| | | |||||||||
Sbjct 27659298 CTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGGGGTATACCCTCCTTGTC 27659357
Query 34297 GGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355
|| ||| || || | || | || | || | | ||||| || | |||||||
Sbjct 27659358 TTGAAT-TTTCGCATTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG 27659416
Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
| ||||| ||||| || |||||||||||||||||| ||
Sbjct 27659417 TCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCTCT 27659454
>seq646
Length=133456746
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||||||| | || |||||||| ||||||||||| ||||| || | ||
Sbjct 124982497 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 124982556
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| |||||| || || || || | || ||||||||| || | || ||||||||
Sbjct 124982557 TCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 124982616
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
|||||| ||| | || | || | || | | ||||| || | ||||||||
Sbjct 124982617 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 124982676
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| || || || || ||||| ||||||||||||
Sbjct 124982677 TTACCAGTCAGGGTCTTCACGAAGATCTGCATC 124982709
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||||||| | || |||||||| ||||||||||| ||||| || | ||
Sbjct 124982725 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 124982784
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| |||||| || || || || | || ||||||||| || | || ||||||||
Sbjct 124982785 TCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 124982844
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
|||||| ||| | || | || | || | | ||||| || | ||||||||
Sbjct 124982845 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 124982904
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| || || || || ||||| ||||||||||||
Sbjct 124982905 TTACCAGTCAGGGTCTTCACGAAGATCTGCATC 124982937
Score = 95.1 bits (104), Expect = 8e-15
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||||||| | ||| |||||||| ||||||||||| ||||| || | ||
Sbjct 124982269 AGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 124982328
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| |||||| || || || || | || ||||||||| || | || ||||||||
Sbjct 124982329 TCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 124982388
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
|||||| ||| | | | || | || | | ||||| || | ||||||||
Sbjct 124982389 TGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 124982448
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || || || || ||||| |||||||||||
Sbjct 124982449 TTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982480
Score = 95.1 bits (104), Expect = 8e-15
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||||||| | ||| |||||||| |||||||| || ||||| || | ||
Sbjct 124982953 AGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGCCCATCT 124983012
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| ||| || || || || || |||| ||||||||| || | || ||||| ||
Sbjct 124983013 TCCAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCT 124983072
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
|||||| ||| | || | || | || | | ||||| || | ||||||||
Sbjct 124983073 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 124983132
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || || ||||| ||||| |||||||||||
Sbjct 124983133 TTACCAGTCAGAGTCTTCACGAAGATCTGCAT 124983164
Score = 93.3 bits (102), Expect = 3e-14
Identities = 168/236 (71%), Gaps = 10/236 (4%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTA--AAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220
|| || ||||| | |||||||||||| | | | || |||||||| ||||| ||||| |
Sbjct 115608225 CCACCTCGCAGGCGCAGCACCAGGTGCAGGATGGAC--TCTTTCTGGATGTTCTAGTCTG 115608282
Query 34221 ACAG-CTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GAC 34278
| || ||| || | || |||| ||| ||||| | || || || | ||||||||| | |
Sbjct 115608283 AGAGACTG-TGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGGTCAGGC 115608341
Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATT 34337
|| | || ||||||||| || ||| ||||| | || | || | || | |
Sbjct 115608342 AGG-ATGCCCTCCTTGTCTTGGAT-TTTAGCTTTGACATTCTCAATGGTGTCACTGGGCC 115608399
Query 34338 CGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
| || || | |||||||| ||||| ||||| || |||| ||||||||||||| ||
Sbjct 115608400 CCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTGTTCATAAAGATCTGCATCTCT 115608455
Score = 89.7 bits (98), Expect = 3e-13
Identities = 148/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
||| |||| ||| | ||| |||||||| ||||||||||| ||||| || | ||
Sbjct 124982040 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATC 124982099
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| ||| || || || || || | || ||||||||| || | || ||||||||
Sbjct 124982100 TTCCAGCTGTTTCCCAGCAAAGATTAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 124982159
Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
|||||| ||| | || | || | || | | || || || | ||||||||
Sbjct 124982160 TTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 124982219
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
||||| || || || ||||| ||||||||||||
Sbjct 124982220 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 124982253
>seq126
Length=135448346
Score = 87.8 bits (96), Expect = 1e-12
Identities = 152/223 (68%), Gaps = 10/223 (4%)
Strand=Plus/Plus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
||| |||||||| | || |||||||| ||||||||||| || || ||| | ||
Sbjct 28264940 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 28264999
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC----------GACGGGCACGC 34286
|||| |||||||||||| || ||||||| ||||||||| | ||| ||
Sbjct 28265000 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGCTGGGGGTGGGGGGTGC 28265059
Query 34287 TCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCA 34346
|| || || ||||| ||| | || | || | || | | || || ||||
Sbjct 28265060 CTTCTTTATCCTGGATCTTGGCCTTCACATTTTCCATGGTGTCACTGGGCTCCACTTCCA 28265119
Query 34347 CCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||||| ||||| || || || |||||||||||||||||
Sbjct 28265120 GGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 28265162
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | ||| | ||| |||||||| | || |||||||| ||||| ||||| ||
Sbjct 28265164 CCACCTCTCAGACACAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAGTCAGAA 28265223
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| ||||| || |||| ||||||| |||| || ||||||| ||||||||| ||
Sbjct 28265224 TGAGTGCGGTCATCTTCCACCTGCTTGACTGCAAAGATGAGCCTCTGCTGGTCCGGGGTA 28265283
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||| || ||||| ||| | || | || | || | | || ||
Sbjct 28265284 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCCCTGGGCTCCACT 28265343
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | | ||||| |||| ||| || || ||||| |||||||||||
Sbjct 28265344 TCAAGGGCAATGGTCTTGCTGGTAAGGGTCTTCACGAAGATCTGCAT 28265390
>seq728
Length=90977943
Score = 84.2 bits (92), Expect = 1e-11
Identities = 151/218 (69%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
||||||||||| || || |||||||| ||||||||| | || || || | ||
Sbjct 41396674 CAGCACCAGGTTTAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGTGGCCATC 41396615
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| | | || || || || || || ||||||||| || | | |||||||||
Sbjct 41396614 CTCCAGCCGTTTCCCAGCAAATATCAGATGCTGCTGGTAAGGTGGGATACCCTCCTTGTC 41396555
Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355
|| ||| ||||| | || || | ||||| | | ||| || | |||||||
Sbjct 41396554 CTGAAT-TTTGGCTTTGACATTCTAAATGGTGTCGGTGGGCTTGACCTCAAGGGTGATGG 41396496
Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
| ||||| ||||| || |||||||||||||||||| ||
Sbjct 41396495 TCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCTCT 41396458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322911702880160
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