Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq931 239 4e-58
seq377 111 1e-19
seq39 98.7 9e-16
seq1 91.5 1e-13
>seq931
Length=156331669
Score = 239 bits (264), Expect = 4e-58
Identities = 525/781 (67%), Gaps = 18/781 (2%)
Strand=Plus/Plus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||| || ||| || || | ||| ||| |||||| | || ||| ||| |||
Sbjct 44829964 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTAACACCACTCTCATCC 44830023
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
| ||||| || | |||||| | |||||||| || || |||| | ||||||||| |
Sbjct 44830024 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44830078
Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATA 16064
|| |||| ||||| || | | | | | || | |||| ||||| || |
Sbjct 44830079 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44830138
Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124
||| || |||||||| || || || || ||||||| | || ||||| || || | |
Sbjct 44830139 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44830198
Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATAT 16184
| ||||| | || || || | || | || |||||| | ||| || | || ||||| |
Sbjct 44830199 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44830258
Query 16185 CTCTTACTACACTATTTAACGGAGGGTTT----AATAAGTGTTTAAACATTATACAAGCA 16240
|||| ||| || | | || ||||| | | |||||| ||||| | ||||||
Sbjct 44830259 CTCTCACTTT-CTCCT---CCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44830314
Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300
|||||||| || || || || || || || || | || || ||||| || || || |||
Sbjct 44830315 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGC 44830374
Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360
|| |||||||||| || | ||| ||||| | ||||| |||||||||||||| || |||
Sbjct 44830375 ATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCT 44830434
Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatcc 16418
|| ||||| || || || || | | ||||| || || || ||| | | | ||||
Sbjct 44830435 TCTACTGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCC--CCAATCC 44830492
Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478
| ||||||| ||| || | || ||||| ||| | || || ||||| || |
Sbjct 44830493 AGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGA 44830551
Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538
| | | |||||||| |||| || ||||| || || || | |||||||||||| |
Sbjct 44830552 GAAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAG 44830611
Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598
|||| || || ||||| || || || || ||||| || || | ||||| | || || |
Sbjct 44830612 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAA 44830671
Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658
|| | ||| | || | || ||||| || ||||| ||||| || |||||||| |
Sbjct 44830672 CTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGA 44830731
Query 16659 A 16659
|
Sbjct 44830732 A 44830732
Score = 107 bits (118), Expect = 2e-18
Identities = 301/458 (66%), Gaps = 7/458 (2%)
Strand=Plus/Minus
Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294
|||||||| | ||| || || || || || || || || | || || |||||||| ||
Sbjct 144506196 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144506137
Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354
|| ||||| |||||| |||| || | ||| ||||| ||||| ||||||||||||||
Sbjct 144506136 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 144506077
Query 16355 ATACCTTCAACTGCGGCAAA---TGCAACCAA-TCGCTCACCGTACGTTCTAtttttact 16410
| | ||| | |||||| |||| ||| || || || | || | | ||| |
Sbjct 144506076 GTGCTTTCCGCCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAATGTCTTTGTT 144506017
Query 16411 ttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGC 16470
| ||||| ||||| ||| || | || |||||| ||| | || || ||
Sbjct 144506016 CCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACAG-GCATCGTTTCAATGGC 144505958
Query 16471 ATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATA 16530
| | || | | | | |||||||| ||||| ||||| || || || || | | |||
Sbjct 144505957 ACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATAT--GTGTCAATAAGGAGATTATT 144505900
Query 16531 CATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGA 16590
||||| |||| || || || || || || || || ||||| ||||| | ||| |
Sbjct 144505899 TATTTCAGAATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTTCTGT 144505840
Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGC 16650
|| || ||||| ||| ||| | |||||||| | | ||| ||||| | ||
Sbjct 144505839 AATCTGAACTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCACATGC 144505780
Query 16651 TGCAAAAAACGCAAGTATGTGTTTAATAAAAttttttt 16688
||| || || || || || || ||||||| | |||
Sbjct 144505779 TGCGAAGAAAGCCAGAATATGGGATATAAAATATCTTT 144505742
>seq377
Length=146757320
Score = 111 bits (122), Expect = 1e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||| | | || || |||||| | | | || |||||||| |
Sbjct 103151081 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAAAAC 103151140
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
||||| || ||||| || |||||||||||||||||||||||||| ||||| ||||
Sbjct 103151141 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 103151200
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||||||||||| ||
Sbjct 103151201 CCATAAAATCAAAAGGATTTTCTG 103151224
Score = 111 bits (122), Expect = 1e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||| | | || || |||||| | | | || |||||||| |
Sbjct 103176334 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAAAAC 103176275
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
||||| || ||||| || |||||||||||||||||||||||||| ||||| ||||
Sbjct 103176274 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 103176215
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||||||||||| ||
Sbjct 103176214 CCATAAAATCAAAAGGATTTTCTG 103176191
>seq39
Length=107640188
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | || || |||||||| || || ||||| ||||||||||| ||
Sbjct 97368601 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 97368660
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| ||||| | ||||| ||||| |||||||| || ||||| ||||| ||||| ||
Sbjct 97368661 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 97368720
Query 16379 ACCAATCGCTCACC 16392
|| | || |||||
Sbjct 97368721 ACAACACGTTCACC 97368734
>seq1
Length=228908639
Score = 91.5 bits (100), Expect = 1e-13
Identities = 127/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 16488 tttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547
|||||||| |||| || ||||| || || || | |||||||||||| ||||| | |
Sbjct 140322472 TTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGT 140322531
Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGT 16607
| ||||| || || || || |||| || || | ||||| | || || ||||| |
Sbjct 140322532 TTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGC 140322591
Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665
||| | || | |||||||| || ||||| ||||| || |||||||| || || ||
Sbjct 140322592 TAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 140322649
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462276633424600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |