Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq744 1572 0.0 seq389 118 7e-22 >seq744 Length=80890724 Score = 1572 bits (1742), Expect = 0.0 Identities = 1372/1696 (81%), Gaps = 51/1696 (3%) Strand=Plus/Plus Query 107098 GCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAA-----------GGGTCTT--A 107144 ||| ||||| || |||| |||||||| |||||| |||| ||| ||| | Sbjct 38055459 GCTAGTTTGTAGGGTCAGATTACAGATCTCCATCAACAAACCAGACGTAAGGGGCTTCTA 38055518 Query 107145 GGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCTGG 107204 ||||| ||| ||| ||||| |||||| | |||| || | | ||| |||||| | ||| Sbjct 38055519 CGCAGGTCTTTACTAAGGATTTTTGTCCAGGTAAGAAATATGT-TTTGCCATCAGTTTGG 38055577 Query 107205 AGTTGAACTTGATGTT-CTGG-----ATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCC 107258 | |||||||||||||| |||| |||||||||||| | |||||||||||||||||| Sbjct 38055578 AATTGAACTTGATGTTTCTGGGAATGATTAGTTTGTAACTGGAGGCATTTTGTTCTGTCC 38055637 Query 107259 AAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-CCTGATCTCCCATCCCAT 107314 |||||| ||||||||| |||| ||||||| | ||| |||| |||||||| | | Sbjct 38055638 AAGGATTGTGTCCTCCTCCTCCTTCCCTGTGCTCGGTCTCCACCTG-TCTCCCATTCTGT 38055696 Query 107315 GAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTG 107374 || ||||| | |||||||| || || |||| | ||| | |||||||||||||||| Sbjct 38055697 GACGATGGTTCAGTGGAAGA-GA--CTCTGCCAGCCGCATTACTTGTGGGCCCTGGGCTG 38055753 Query 107375 CTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGA 107434 |||||||||||||||| ||| |||||| |||||| ||||||| || ||||| || Sbjct 38055754 CTATATGCTGCTGGCCACTGTGGCTCTGAAACTTTCTTTCAGGTTGAAGTGTGACTCTGA 38055813 Query 107435 TTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAA 107494 |||| ||||||||||||||| | || || ||| |||||||| | || ||||| | Sbjct 38055814 CCAGTTGGGTCTGGAGTCCAGGGAATCTCAAAGCCAGTACTGTAGGAATATCTTGTATGA 38055873 Query 107495 TAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCA 107554 | |||||| |||||||||||||| || ||||||||||| ||| |||| ||||||||||| Sbjct 38055874 TTTCCTGAAACTGCCAGCAAAGAGGTCTATCAACTGTTCAGGGGTCACCCGAGGGGACCA 38055933 Query 107555 GGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCT 107614 || |||||| | ||||| | || | |||||||| || ||||| ||||| |||| | Sbjct 38055934 AGAGGCAGTGCTTCAGGCTATTCTGAATAACCTGGAGGTCAAGAAGAAGCGAGAGCCTTT 38055993 Query 107615 CACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAA 107674 ||| | |||| | |||||| | | |||||||||||||||| |||||||||| ||||||| Sbjct 38055994 CACAGACACCCACTACCTCTCCCTCACCAGAGACTGTGAGCACTTCAAGGCCGAAAGGAA 38056053 Query 107675 GTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 ||||||||||||||||||||| ||||||||| | || ||||| ||||| ||||| ||||| Sbjct 38056054 GTTCATACAGTTCCCACTGAGCAAAGAAGAGGTGGAGTTCCCTATTGCATACTCTATGGT 38056113 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 | | ||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||| Sbjct 38056114 GATTCATGAGAAGATTGAAAATTTTGAAAGGCTACTGCGAGCTGTGTATGCCCCTCAGAA 38056173 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGC 107854 ||||||||| ||||| ||||||| |||||||||||| |||||||||||||| ||||| || Sbjct 38056174 CATATACTGCGTCCATGTGGATGAGAAGTCCCCAGAAACTTTCAAAGAGGCAGTCAAAGC 38056233 Query 107855 CATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGC 107914 |||||||| |||||||| ||||||||||| ||||||||| |||| | |||||||||||| Sbjct 38056234 AATTATTTCTTGCTTCCCAAATGTCTTCATAGCCAGTAAGCTGGTTCGGGTGGTTTATGC 38056293 Query 107915 CTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGT 107974 |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 38056294 CTCCTGGTCCAGGGTGCAAGCTGACCTCAACTGCATGGAAGACTTGCTCCAGAGCTCAGT 38056353 Query 107975 GCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGA 108034 ||| ||||| ||||| ||||||||||| ||||| ||||| || ||||||| |||||| || Sbjct 38056354 GCCGTGGAAATACTTGCTGAATACATGTGGGACGGACTTTCCTATAAAGAGCAATGCGGA 38056413 Query 108035 GATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTC 108094 |||||||| ||| |||||||||||||| || | ||| || |||||||| ||||||||| | Sbjct 38056414 GATGGTCCAGGCTCTCAAGATGTTGAATGGGAGGAATAGCATGGAGTCAGAGGTACCTCC 38056473 Query 108095 TGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGACACACTGTACCC 108151 | || |||| ||| ||||||||||| | || |||| |||| ||||||| | ||| Sbjct 38056474 TAAGCACAAAGAAACCCGCTGGAAATATCACTTTGAGGTAGTGAGAGACACATTACACCT 38056533 Query 108152 TACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTA 108211 |||| ||||| |||||| ||||||||| |||||||| | ||||| ||||||||||| || Sbjct 38056534 AACCAACAAGAAGAAGGATCCTCCCCCTTATAATTTAACTATGTTTACAGGGAATGCGTA 38056593 Query 108212 TTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACT 108271 ||||||| || |||| |||||||||||||| || | ||||||||||||||| ||| Sbjct 38056594 CATTGTGGCTTCCCGAGATTTTGTCCAACATGTTTTGAAGAACCCTAAATCCCAACAACT 38056653 Query 108272 GGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG 108331 | |||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 38056654 GATTGAATGGGTAAAAGACACCTATAGCCCTGATGAACACCTCTGGGCCACCCTTCAGCG 38056713 Query 108332 TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGAC 108391 ||| | ||||||||||||||||||||| | ||| |||||||| |||||||||||||||| Sbjct 38056714 TGCACGGTGGATGCCTGGCTCTGTTCCCAACCATCCCAAGTACGACATCTCAGACATGAC 38056773 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 | | || |||||||| |||||||||||| || |||||||| || | ||| || || Sbjct 38056774 TTCTATTGCCAGGCTGGTCAAGTGGCAGGGTCATGAGGGAGACATCGATAAGGGTGCTCC 38056833 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 |||||| ||||||||||||||||| | | |||| ||||| |||| ||||| |||||| | Sbjct 38056834 TTATGCTCCCTGCTCTGGAATCCACCAGCGGGCTGTCTGCGTTTATGGGGCTGGGGACTT 38056893 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571 | | ||||| || || ||||||||||| ||||| |||||||||||||| | ||| ||||| Sbjct 38056894 GAATTGGATGCTTCAAAACCATCACCTGTTGGCCAACAAGTTTGACCCAAAGGTAGATGA 38056953 Query 108572 TAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACT 108631 ||| | || |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 38056954 TAATGCTCTTCAGTGCTTAGAAGAGTACCTACGTTATAAGGCCATCTATGGGACTGAACT 38057013 Query 108632 TTGAG-----CT------GCA-------CTGT-GGGCCAGGGACTGTGCCAACATGCCCA 108672 ||||| || ||| |||| |||| || | ||| | ||||||| || Sbjct 38057014 TTGAGACACACTATGAGAGCATTGCTACCTGTGGGGCAAGAGCATGTACAAACATGCTCA 38057073 Query 108673 GGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCCA 108732 | | | |||| || |||| ||||||| ||| |||||| || ||| |||||||| | Sbjct 38057074 GAACTTGCTGGGACAGTGT-GGGTGGGAGACCAGGGCTTTGCAATTGGTGGCATCCTTTA 38057132 Query 108733 GGGTCAGAGGGCTGCT 108748 || | ||||||||||| Sbjct 38057133 GGATAAGAGGGCTGCT 38057148 >seq389 Length=121655618 Score = 118 bits (130), Expect = 7e-22 Identities = 569/896 (64%), Gaps = 49/896 (5%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| || || || || || || || || ||||| ||| | ||| Sbjct 58323596 CCCCTTAGTAAAGAAGAGGCGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAG 58323655 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||||||| | ||| | ||| |||||||| | || || | Sbjct 58323656 ATTGAAATGCTTGACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 58323715 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| || ||| ||| || | | || || || | || ||| |||| Sbjct 58323716 CATGTGGACACAAAATCC---GAGGATTCCTATTTAGCTGCAGTGATGGGCATCGCTTCC 58323772 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || || |||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 58323773 TGTTTTAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGC 58323832 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCA--TGG 107981 | || || |||||||| ||||| ||| | || ||| | | | ||||| | ||| Sbjct 58323833 CGGGTTCAGGCTGACCTCAACTGCATGAAGGAT---CTCTATGCAATGAGTGCAAACTGG 58323889 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || || || || || ||||| || || ||| Sbjct 58323890 AAGTACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTC 58323949 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGG---TACCTTCTGAG 108098 | |||||| |||| | ||| | |||| |||| | ||| | || || | Sbjct 58323950 AGGAAGCTCAAGTTGTTAATGGGAGAAAACAACCTGGAAACGGAGAGGATGCCATCCCAT 58324009 Query 108099 TCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGT---------------GACAGACACA 108143 ||| || | | ||||| | || |||||||| |||| ||||| Sbjct 58324010 ---AAAGAAGAAAGGTGGAAGAAGCGGTATGAGGTCGTTAATGGAAAGCTGACAAACACA 58324066 Query 108144 CTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGG 108203 | || ||| ||| ||||| | || | ||| | || | || Sbjct 58324067 GGG------ACTGTCAAAATGCTT---CCTCCACTCGAAAC---ACCTCTTTTTTCTGGC 58324114 Query 108204 AATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCC 108263 | |||||| || |||| | | | | | ||| |||| || | || ||| | Sbjct 58324115 AGTGCCTACTTCGTGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAAAAATC 58324174 Query 108264 CAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACC 108323 |||| | | || |||| ||||||| || ||||| || || | |||||||||||| Sbjct 58324175 CAAAAGTTTATGGAGTGGGCACAAGACACATACAGCCCTGATGAGTATCTCTGGGCCACC 58324234 Query 108324 CTTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCC-AAGTATCACATCT 108381 | || | ||| || | | || ||||| | || |||| || |||||| | | | Sbjct 58324235 ATCCAAAGGATTCC-TGAAGTCCCGGGCTCACTCTCT-GCCAGCCATAAGTATGATTTGT 58324292 Query 108382 CAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCA 108441 | |||||| || | |||||| | ||||||||||||||| ||||| ||||| || Sbjct 58324293 CTGACATGCAAGCAGTTGCCAGGTTTGTCAAGTGGCAGTACTTTGAGGGTGATGTTTCCA 58324352 Query 108442 TGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGG 108501 ||| || || || | |||||| |||| ||||| | | | | ||||||| ||| | Sbjct 58324353 AGGGTGCTCCCTACCCGCCCTGCAATGGAGTCCATGTGCGCTCAGTGTGCATTTTCGGAG 58324412 Query 108502 CCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | || ||| || ||||||| || | || || ||| | || || || ||||||||| Sbjct 58324413 CTGGTGACTTGAACTGGATGCTGCGCAAACACCACTTGTTTGCCAATAAGTTTGAC 58324468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348096001102014