Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq646 125 6e-24 seq389 116 3e-21 seq219 104 2e-17 seq377 95.1 1e-14 seq168 91.5 1e-13 seq287 87.8 1e-12 seq728 84.2 2e-11 >seq646 Length=133456746 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | ||||||||||| ||| ||| ||||| ||||||||||| | Sbjct 124982026 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 124982085 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| ||||| || || || || |||| ||| ||||| ||||| Sbjct 124982086 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATTAACCTCTGCTGGTCAGGAGGG 124982145 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| || ||| ||| || | | | | |||| | ||||||| Sbjct 124982146 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 124982205 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || |||||||| ||||| |||||||| ||||| ||||| Sbjct 124982206 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 124982252 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||| |||||| || ||| ||||| ||||||||||| | Sbjct 124982254 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAC 124982313 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || |||||||| || ||||||| ||| ||||| ||||| Sbjct 124982314 AGGGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 124982373 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| || ||| ||| || | | | | |||| | ||| ||| Sbjct 124982374 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACC 124982433 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || ||||| |||||||| ||||| ||||| Sbjct 124982434 TCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982480 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||| |||||| ||| ||| ||||| ||||||||||| | Sbjct 124982482 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 124982541 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || ||||| || || ||||||| ||| ||||| ||||| Sbjct 124982542 AGGGTGCGCCCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 124982601 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| || ||| ||| || | | | | |||| | ||| ||| Sbjct 124982602 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 124982661 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || ||||| |||||||| ||||| ||||| Sbjct 124982662 TCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982708 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||| |||||| ||| ||| ||||| ||||||||||| | Sbjct 124982710 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 124982769 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || ||||| || || ||||||| ||| ||||| ||||| Sbjct 124982770 AGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 124982829 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| || ||| ||| || | | | | |||| | ||| ||| Sbjct 124982830 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 124982889 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || ||||| |||||||| ||||| ||||| Sbjct 124982890 TCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982936 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||| |||||| || ||| ||||| |||||||| || | Sbjct 124982938 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAC 124982997 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| |||||||| || || |||| || ||| ||||| ||||| Sbjct 124982998 AGGGTGCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 124983057 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || || ||| ||| || | | | | |||| | ||| ||| Sbjct 124983058 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 124983117 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || |||||||||||||| ||||| ||||| Sbjct 124983118 TCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACGAAGATCTGCAT 124983164 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||| |||||| || ||| ||||| ||||| ||||| Sbjct 115608224 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGATGGACTCTTTCTGGATGTTCTAGTCTGA 115608283 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | | | || ||||| ||||| || | ||||||| | ||| ||||| || | Sbjct 115608284 GAGACTGTGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGGTCAGGCAG 115608343 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||| ||||| || || | | | | |||| | | |||| Sbjct 115608344 GATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCCCCAC 115608403 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || ||||||||||| || || |||| |||||| ||||| Sbjct 115608404 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTGTTCATAAAGATCTGCAT 115608451 >seq389 Length=121655618 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||| | ||| || ||||| ||||||||||| || ||| | || ||| Sbjct 27659242 ACCAGGTGCGGGGTGGGCTGTTTCTGGATGTTGTAGTCTGAGAGAATGCGGCCATCCTCC 27659301 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| | ||| ||||||| ||||| ||||| || || | |||||||||||| | Sbjct 27659302 AGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGGGGTATACCCTCCTTGTCTTGA 27659361 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 27659362 ATTTTCGCATTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTG 27659421 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || |||||||||||||| ||||| Sbjct 27659422 CCCGTGAGGGTCTTCACAAAGATCTGCAT 27659450 >seq219 Length=165317712 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | |||| |||||| || ||||||||| ||||||||||| Sbjct 62366579 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 62366638 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || || | || ||| ||||||||||| Sbjct 62366639 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 62366698 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || || ||| || || ||| || | | | |||| | |||||| Sbjct 62366699 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 62366758 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || |||||||| ||||| |||||||| ||||| ||||| Sbjct 62366759 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 62366805 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | |||| |||||| || ||||||||| ||||||||||| Sbjct 62366807 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 62366866 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || || | || ||| |||||||| || Sbjct 62366867 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 62366926 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| || || ||| || | | | |||| | ||||||| Sbjct 62366927 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 62366986 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || | ||| || |||||||| || || || ||||| ||||| ||||| ||| Sbjct 62366987 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTTG 62367037 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| || ||| ||||| ||||||||||| Sbjct 62366350 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 62366409 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || || || || | || ||| ||||||||||| Sbjct 62366410 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGG 62366469 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || || || || || || ||| || | | | |||| | |||||| Sbjct 62366470 GATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 62366529 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || |||||||| ||||| |||||||| ||||| ||||| Sbjct 62366530 CTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 62366577 >seq377 Length=146757320 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/228 (68%), Gaps = 18/228 (8%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||| |||||| ||| ||| ||||| ||||||||||| Sbjct 124616689 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 124616630 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| ||||| || || | ||||| ||||| ||||| || || Sbjct 124616629 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGG 124616570 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || |||| || | || | ||| || Sbjct 124616569 GATGCCCTCCTTGTCCTGAA-TTTTGGCGTTACTG-----------------GGCTCGAC 124616528 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || |||||||| || || |||||||||||||| ||||| Sbjct 124616527 CTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 124616480 >seq168 Length=201391403 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCG 45184 |||| |||||||||| ||| ||| | ||||||||||| || ||||| ||| || Sbjct 28010468 ACCAGGTGCAGCGTGGACTCTTTCCGGATGTTGTAGTCTGAGAGAGTTTGGCCATCCTC- 28010410 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||| ||||| || || | ||||| |||| ||||| || || | ||| ||||||| Sbjct 28010409 --CAGCTGTTTGCCAGCAAGTATCAGATGCTGCTGGTCAGGTGGGATACC-TCCTTGTGT 28010353 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| || || | | | | |||| | || ||||| | || || ||| Sbjct 28010352 TGAATTTTGGCTTTGACATTCTCAATGGTGTCACTTGGCTTGACCTCAAGAGTGATGGTC 28010293 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| || |||||||||||||| ||||| Sbjct 28010292 TTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 28010261 >seq287 Length=159110946 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 ||| |||||| || ||| ||||| |||||| |||| || ||| | || |||| Sbjct 25710637 CCAGGTGCAGGATGGACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCA 25710696 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | ||||| || || ||||||| || || ||||| | || | ||||||||||| || Sbjct 25710697 GCTGTTTGCCCGCAAATATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTTGTCTCGAA 25710756 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 ||| ||| || | | | |||| | ||| ||||| | ||| || ||||||| Sbjct 25710757 TTTCGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 25710816 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || || |||||| ||||||| ||||| Sbjct 25710817 CTGTGAGGGTCTTCGCAAAGATCTGCAT 25710844 >seq728 Length=90977943 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||| ||||| ||||||||| | || | | | || ||| Sbjct 41396670 ACCAGGTTTAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGTGGCCATCCTCC 41396611 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||| || || ||||||| |||| |||| || || | ||||||||||||| | Sbjct 41396610 AGCCGTTTCCCAGCAAATATCAGATGCTGCTGGTAAGGTGGGATACCCTCCTTGTCCTGA 41396551 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | |||| || ||||| | ||| || |||||| Sbjct 41396550 ATTTTGGCTTTGACATTCTAAATGGTGTCGGTGGGCTTGACCTCAAGGGTGATGGTCTTG 41396491 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || |||||||||||||| ||||| Sbjct 41396490 CCCGTGAGGGTCTTCACAAAGATCTGCAT 41396462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394879177389931