Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq646 125 6e-24
seq389 116 3e-21
seq219 104 2e-17
seq377 95.1 1e-14
seq168 91.5 1e-13
seq287 87.8 1e-12
seq728 84.2 2e-11
>seq646
Length=133456746
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| || ||||| | | ||||||||||| ||| ||| ||||| ||||||||||| |
Sbjct 124982026 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 124982085
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| | || ||||| ||||| || || || || |||| ||| ||||| |||||
Sbjct 124982086 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATTAACCTCTGCTGGTCAGGAGGG 124982145
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || |||||||| || ||| ||| || | | | | |||| | |||||||
Sbjct 124982146 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 124982205
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| | ||| || |||||||| ||||| |||||||| ||||| |||||
Sbjct 124982206 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 124982252
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||| | | | |||| |||||| || ||| ||||| ||||||||||| |
Sbjct 124982254 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAC 124982313
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| | || ||||| || |||||||| || ||||||| ||| ||||| |||||
Sbjct 124982314 AGGGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 124982373
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || |||||||| || ||| ||| || | | | | |||| | ||| |||
Sbjct 124982374 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACC 124982433
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| | ||| || ||||| || ||||| |||||||| ||||| |||||
Sbjct 124982434 TCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982480
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||| | | | |||| |||||| ||| ||| ||||| ||||||||||| |
Sbjct 124982482 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 124982541
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| | || ||||| || ||||| || || ||||||| ||| ||||| |||||
Sbjct 124982542 AGGGTGCGCCCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 124982601
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || |||||||| || ||| ||| || | | | | |||| | ||| |||
Sbjct 124982602 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 124982661
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| | ||| || ||||| || ||||| |||||||| ||||| |||||
Sbjct 124982662 TCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982708
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||| | | | |||| |||||| ||| ||| ||||| ||||||||||| |
Sbjct 124982710 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 124982769
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| | || ||||| || ||||| || || ||||||| ||| ||||| |||||
Sbjct 124982770 AGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 124982829
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || |||||||| || ||| ||| || | | | | |||| | ||| |||
Sbjct 124982830 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 124982889
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| | ||| || ||||| || ||||| |||||||| ||||| |||||
Sbjct 124982890 TCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 124982936
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||| | | | |||| |||||| || ||| ||||| |||||||| || |
Sbjct 124982938 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAC 124982997
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| | || ||||| |||||||| || || |||| || ||| ||||| |||||
Sbjct 124982998 AGGGTGCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 124983057
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || ||||| || || ||| ||| || | | | | |||| | ||| |||
Sbjct 124983058 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 124983117
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| | ||| || ||||| || |||||||||||||| ||||| |||||
Sbjct 124983118 TCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACGAAGATCTGCAT 124983164
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||||| || | | |||| |||||| || ||| ||||| ||||| |||||
Sbjct 115608224 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGATGGACTCTTTCTGGATGTTCTAGTCTGA 115608283
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| | | | || ||||| ||||| || | ||||||| | ||| ||||| || |
Sbjct 115608284 GAGACTGTGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGGTCAGGCAG 115608343
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| ||||||||||| ||||| || || | | | | |||| | | ||||
Sbjct 115608344 GATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCCCCAC 115608403
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| | ||| || ||||||||||| || || |||| |||||| |||||
Sbjct 115608404 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTGTTCATAAAGATCTGCAT 115608451
>seq389
Length=121655618
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||| | ||| || ||||| ||||||||||| || ||| | || |||
Sbjct 27659242 ACCAGGTGCGGGGTGGGCTGTTTCTGGATGTTGTAGTCTGAGAGAATGCGGCCATCCTCC 27659301
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| | ||| ||||||| ||||| ||||| || || | |||||||||||| |
Sbjct 27659302 AGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGGGGTATACCCTCCTTGTCTTGA 27659361
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| || || | | | | |||| | ||| ||||| | ||| || ||||||
Sbjct 27659362 ATTTTCGCATTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTG 27659421
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| || |||||||||||||| |||||
Sbjct 27659422 CCCGTGAGGGTCTTCACAAAGATCTGCAT 27659450
>seq219
Length=165317712
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||||| | | |||| |||||| || ||||||||| |||||||||||
Sbjct 62366579 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 62366638
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| | || ||||| || || || || || || | || ||| |||||||||||
Sbjct 62366639 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 62366698
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || || || ||| || || ||| || | | | |||| | ||||||
Sbjct 62366699 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 62366758
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| ||| || |||||||| ||||| |||||||| ||||| |||||
Sbjct 62366759 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 62366805
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||||| | | |||| |||||| || ||||||||| |||||||||||
Sbjct 62366807 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 62366866
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| | || ||||| || || || || || || | || ||| |||||||| ||
Sbjct 62366867 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 62366926
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || ||||| ||| || || ||| || | | | |||| | |||||||
Sbjct 62366927 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 62366986
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|| | ||| || |||||||| || || || ||||| ||||| ||||| |||
Sbjct 62366987 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTTG 62367037
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| |||| | | |||| |||||| || ||| ||||| |||||||||||
Sbjct 62366350 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 62366409
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| ||| | || ||||| || || || || || || | || ||| |||||||||||
Sbjct 62366410 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGG 62366469
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| || || || || || || ||| || | | | |||| | ||||||
Sbjct 62366470 GATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 62366529
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| || || |||||||| ||||| |||||||| ||||| |||||
Sbjct 62366530 CTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 62366577
>seq377
Length=146757320
Score = 95.1 bits (104), Expect = 1e-14
Identities = 156/228 (68%), Gaps = 18/228 (8%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||||| || | | |||| |||||| ||| ||| ||||| |||||||||||
Sbjct 124616689 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 124616630
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| ||| | || ||||| ||||| || || | ||||| ||||| ||||| || ||
Sbjct 124616629 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGG 124616570
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| |||||||||||| || |||| || | || | ||| ||
Sbjct 124616569 GATGCCCTCCTTGTCCTGAA-TTTTGGCGTTACTG-----------------GGCTCGAC 124616528
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| | ||| || |||||||| || || |||||||||||||| |||||
Sbjct 124616527 CTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 124616480
>seq168
Length=201391403
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/212 (70%), Gaps = 7/212 (3%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCG 45184
|||| |||||||||| ||| ||| | ||||||||||| || ||||| ||| ||
Sbjct 28010468 ACCAGGTGCAGCGTGGACTCTTTCCGGATGTTGTAGTCTGAGAGAGTTTGGCCATCCTC- 28010410
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
||| ||||| || || | ||||| |||| ||||| || || | ||| |||||||
Sbjct 28010409 --CAGCTGTTTGCCAGCAAGTATCAGATGCTGCTGGTCAGGTGGGATACC-TCCTTGTGT 28010353
Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304
|||||| || || | | | | |||| | || ||||| | || || |||
Sbjct 28010352 TGAATTTTGGCTTTGACATTCTCAATGGTGTCACTTGGCTTGACCTCAAGAGTGATGGTC 28010293
Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||||||| || |||||||||||||| |||||
Sbjct 28010292 TTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 28010261
>seq287
Length=159110946
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188
||| |||||| || ||| ||||| |||||| |||| || ||| | || ||||
Sbjct 25710637 CCAGGTGCAGGATGGACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCA 25710696
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| ||||| || || ||||||| || || ||||| | || | ||||||||||| ||
Sbjct 25710697 GCTGTTTGCCCGCAAATATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTTGTCTCGAA 25710756
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
||| ||| || | | | |||| | ||| ||||| | ||| || |||||||
Sbjct 25710757 TTTCGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGC 25710816
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336
| || || |||||| ||||||| |||||
Sbjct 25710817 CTGTGAGGGTCTTCGCAAAGATCTGCAT 25710844
>seq728
Length=90977943
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| || || ||| ||| ||||| ||||||||| | || | | | || |||
Sbjct 41396670 ACCAGGTTTAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGTGGCCATCCTCC 41396611
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| |||| || || ||||||| |||| |||| || || | ||||||||||||| |
Sbjct 41396610 AGCCGTTTCCCAGCAAATATCAGATGCTGCTGGTAAGGTGGGATACCCTCCTTGTCCTGA 41396551
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| || || | | | |||| || ||||| | ||| || ||||||
Sbjct 41396550 ATTTTGGCTTTGACATTCTAAATGGTGTCGGTGGGCTTGACCTCAAGGGTGATGGTCTTG 41396491
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| || |||||||||||||| |||||
Sbjct 41396490 CCCGTGAGGGTCTTCACAAAGATCTGCAT 41396462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394879177389931
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