Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12- 19] 40,711 sequences; 3,063,362,794 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq931 271 7e-68 seq1 123 2e-23 seq39 120 3e-22 >seq931 Length=156331669 Score = 271 bits (300), Expect = 7e-68 Identities = 493/715 (69%), Gaps = 10/715 (1%) Strand=Plus/Plus Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || | ||||| | |||||||||||||| ||| |||||| ||||| ||| Sbjct 44830026 TGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCTCC 44830080 Query 13976 ATAAAATCAAATGGATT-TGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 |||| |||||||| | | | | ||| ||| | | |||| ||||| | | | Sbjct 44830081 GTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA-AACCCAGTTCCAGCATAAG 44830139 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 ||| || || | |||||||| ||||| ||||| | |||||||| || || || || Sbjct 44830140 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44830199 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 ||||| | | ||| | ||||||| |||||| ||||| | | | || || Sbjct 44830200 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 44830259 Query 14155 CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 14214 | | | || | || || | | || ||||| || || || || |||||||| Sbjct 44830260 TCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 44830319 Query 14215 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 14274 ||| || | ||||||||||| ||||||||||| || ||||| || | || |||||| Sbjct 44830320 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGG 44830379 Query 14275 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 14334 ||||||||| || | ||| ||||| | || || || || |||||||| || || || || Sbjct 44830380 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTAC 44830439 Query 14335 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14394 |||||| || |||| | |||| ||| | | || | ||||| | ||||| Sbjct 44830440 TGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAA 44830499 Query 14395 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTC 14454 ||||| || | || || || | | || ||| | |||||| ||||| || | | ||| Sbjct 44830500 GGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAGAAATTC 44830558 Query 14455 CTTCTCTTT-AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 | | ||||| || ||| ||||| || |||||||| | |||||||||||||| |||| Sbjct 44830559 CCTTTCTTTGAGATCTT-TGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44830617 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTG 14573 |||||||||| || || || || ||||| ||||| | ||||||| || || | Sbjct 44830618 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44830677 Query 14574 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14628 | ||||| || ||||||||||||| ||||| |||||||| |||||||| || Sbjct 44830678 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44830732 Score = 120 bits (132), Expect = 3e-22 Identities = 300/445 (67%), Gaps = 17/445 (4%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | Sbjct 144506196 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144506137 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || ||||||| |||| |||| || | ||| ||||| || || || || |||||||| Sbjct 144506136 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 144506077 Query 14324 ATTCCCTCAACTGCAGCAAACGCT--AT--TAATCGTTCTCCAAACG--ATGCTTTTTTG 14377 | | || | ||||| ||| || | ||||||||| | ||| | |||| Sbjct 144506076 GTGCTTTCCGCCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAATG--TCTTTG 144506019 Query 14378 TTCGATATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14436 ||| ||||| | || |||| | | || || || | | | ||| |||||||| Sbjct 144506018 TTCCCAATCCA-ACACAAGACCCAACCTGCCTTCTTCTTGA-CACAGGCATCGTTTCAAT 144505961 Query 14437 AGCATTAAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGC 14495 ||| | || | | |||| | ||||| || ||| || ||||| |||||||| | Sbjct 144505960 GGCACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAA---TATGTGTCAATAAGGAGAT 144505904 Query 14496 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14555 ||| |||||||| | ||||||||| ||||| || || || ||||| || || | || Sbjct 144505903 TATTTATTTCAGAATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTT 144505844 Query 14556 CTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14615 ||| || || ||| |||| ||| | || ||||||| | ||| ||||||| Sbjct 144505843 CTGTAATCTGAACTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCAC 144505784 Query 14616 TAGCTGCAAAAAATGCC--AATATG 14638 ||||| || || ||| |||||| Sbjct 144505783 ATGCTGCGAAGAAAGCCAGAATATG 144505759 >seq1 Length=228908639 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 14428 TGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14487 ||||||||| | || || | | |||| | ||||| | | | ||||| || ||||| Sbjct 140322443 TGTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAAT 140322502 Query 14488 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACA 14547 ||| | |||||||||||||| ||| |||||||||| || || || || |||| ||||| Sbjct 140322503 AAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACA 140322562 Query 14548 TCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14607 | ||||||| || || ||| | ||||| || |||| |||||||| ||||| Sbjct 140322563 GCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTAT 140322622 Query 14608 ACCATCACTAGCTGCAAAAAATGCCA 14633 |||||||| |||||||| || |||| Sbjct 140322623 GCCATCACTTGCTGCAAAGAAAGCCA 140322648 >seq39 Length=107640188 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 97368599 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 97368658 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || ||||||||||| || || || ||||||||||| | Sbjct 97368659 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 97368718 Query 14346 CTATTAATCGTTCTCC 14361 ||| | ||||| || Sbjct 97368719 CTACAACACGTTCACC 97368734 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 97366489 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 97366547 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 97366548 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 97366607 Query 13975 CATAAAATCAAATGGATT 13992 |||||| |||||||| || Sbjct 97366608 CATAAAGTCAAATGGGTT 97366625 Score = 86.0 bits (94), Expect = 6e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 97370977 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 97371036 Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | ||||||| Sbjct 97371037 AAGCCATAGAAACAGCGGGCTTCTG 97371061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482100140353480