Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq931 271 7e-68
seq1 123 2e-23
seq39 120 3e-22
>seq931
Length=156331669
Score = 271 bits (300), Expect = 7e-68
Identities = 493/715 (69%), Gaps = 10/715 (1%)
Strand=Plus/Plus
Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975
||||| || | ||||| | |||||||||||||| ||| |||||| ||||| |||
Sbjct 44830026 TGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCTCC 44830080
Query 13976 ATAAAATCAAATGGATT-TGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034
|||| |||||||| | | | | ||| ||| | | |||| ||||| | | |
Sbjct 44830081 GTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA-AACCCAGTTCCAGCATAAG 44830139
Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094
||| || || | |||||||| ||||| ||||| | |||||||| || || || ||
Sbjct 44830140 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44830199
Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154
||||| | | ||| | ||||||| |||||| ||||| | | | || ||
Sbjct 44830200 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 44830259
Query 14155 CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 14214
| | | || | || || | | || ||||| || || || || ||||||||
Sbjct 44830260 TCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 44830319
Query 14215 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 14274
||| || | ||||||||||| ||||||||||| || ||||| || | || ||||||
Sbjct 44830320 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGG 44830379
Query 14275 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 14334
||||||||| || | ||| ||||| | || || || || |||||||| || || || ||
Sbjct 44830380 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTAC 44830439
Query 14335 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14394
|||||| || |||| | |||| ||| | | || | ||||| | |||||
Sbjct 44830440 TGCAGCGAAGGCTACAACATGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAA 44830499
Query 14395 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTC 14454
||||| || | || || || | | || ||| | |||||| ||||| || | | |||
Sbjct 44830500 GGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAGAAATTC 44830558
Query 14455 CTTCTCTTT-AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513
| | ||||| || ||| ||||| || |||||||| | |||||||||||||| ||||
Sbjct 44830559 CCTTTCTTTGAGATCTT-TGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44830617
Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTG 14573
|||||||||| || || || || ||||| ||||| | ||||||| || || |
Sbjct 44830618 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44830677
Query 14574 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14628
| ||||| || ||||||||||||| ||||| |||||||| |||||||| ||
Sbjct 44830678 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44830732
Score = 120 bits (132), Expect = 3e-22
Identities = 300/445 (67%), Gaps = 17/445 (4%)
Strand=Plus/Minus
Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263
|| ||||| | ||| || | |||||||| || ||||||||||| || |||||||| |
Sbjct 144506196 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144506137
Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323
|| ||||||| |||| |||| || | ||| ||||| || || || || ||||||||
Sbjct 144506136 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 144506077
Query 14324 ATTCCCTCAACTGCAGCAAACGCT--AT--TAATCGTTCTCCAAACG--ATGCTTTTTTG 14377
| | || | ||||| ||| || | ||||||||| | ||| | ||||
Sbjct 144506076 GTGCTTTCCGCCAGGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAATG--TCTTTG 144506019
Query 14378 TTCGATATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14436
||| ||||| | || |||| | | || || || | | | ||| ||||||||
Sbjct 144506018 TTCCCAATCCA-ACACAAGACCCAACCTGCCTTCTTCTTGA-CACAGGCATCGTTTCAAT 144505961
Query 14437 AGCATTAAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGC 14495
||| | || | | |||| | ||||| || ||| || ||||| |||||||| |
Sbjct 144505960 GGCACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAA---TATGTGTCAATAAGGAGAT 144505904
Query 14496 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14555
||| |||||||| | ||||||||| ||||| || || || ||||| || || | ||
Sbjct 144505903 TATTTATTTCAGAATATATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGGAGGTTT 144505844
Query 14556 CTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14615
||| || || ||| |||| ||| | || ||||||| | ||| |||||||
Sbjct 144505843 CTGTAATCTGAACTTCTTGAACAAATTGTTCCACGAAGTTTTCATCTATTATCCCATCAC 144505784
Query 14616 TAGCTGCAAAAAATGCC--AATATG 14638
||||| || || ||| ||||||
Sbjct 144505783 ATGCTGCGAAGAAAGCCAGAATATG 144505759
>seq1
Length=228908639
Score = 123 bits (136), Expect = 2e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 14428 TGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14487
||||||||| | || || | | |||| | ||||| | | | ||||| || |||||
Sbjct 140322443 TGTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAAT 140322502
Query 14488 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACA 14547
||| | |||||||||||||| ||| |||||||||| || || || || |||| |||||
Sbjct 140322503 AAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACA 140322562
Query 14548 TCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14607
| ||||||| || || ||| | ||||| || |||| |||||||| |||||
Sbjct 140322563 GCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTAT 140322622
Query 14608 ACCATCACTAGCTGCAAAAAATGCCA 14633
|||||||| |||||||| || ||||
Sbjct 140322623 GCCATCACTTGCTGCAAAGAAAGCCA 140322648
>seq39
Length=107640188
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 97368599 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 97368658
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||| | || || || ||||||||||| || || || ||||||||||| |
Sbjct 97368659 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 97368718
Query 14346 CTATTAATCGTTCTCC 14361
||| | ||||| ||
Sbjct 97368719 CTACAACACGTTCACC 97368734
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 97366489 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 97366547
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 97366548 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 97366607
Query 13975 CATAAAATCAAATGGATT 13992
|||||| |||||||| ||
Sbjct 97366608 CATAAAGTCAAATGGGTT 97366625
Score = 86.0 bits (94), Expect = 6e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533
||||| || |||||||| | |||||||||||||| |||||||||||||| || || ||
Sbjct 97370977 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 97371036
Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558
|| ||||| ||||| | |||||||
Sbjct 97371037 AAGCCATAGAAACAGCGGGCTTCTG 97371061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482100140353480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |