Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gorilla_20gorilla_20gorilla_20[refseq_20GCF_5F000151905.2_202014-12-
19] 40,711 sequences; 3,063,362,794 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq219 95.1 9e-15
seq646 87.8 1e-12
seq1 86.0 5e-12
seq168 82.4 6e-11
>seq219
Length=165317712
Score = 95.1 bits (104), Expect = 9e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || || || || ||||||||||| | | || | ||||
Sbjct 62366822 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 62366881
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || || || ||| | ||||||||||||
Sbjct 62366882 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCC 62366941
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | ||| || | | | | ||||||| |||||| |||| ||||||| |
Sbjct 62366942 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 62367001
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|||||||| | ||||| || || || ||||||||
Sbjct 62367002 TTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 62367036
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || || || || ||||||||||| | | || | ||||
Sbjct 57062639 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACCGCCATCT 57062698
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || ||||| ||| | |||||| |||||
Sbjct 57062699 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGTGGGGGATGCCTTCTTTATCT 57062758
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | ||| || | | | | ||||||| |||||| ||| | ||||||| |
Sbjct 57062759 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTC 57062818
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||||||||| || || || || || |||||
Sbjct 57062819 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 57062850
Score = 86.0 bits (94), Expect = 5e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| || || || | ||||| || ||||||||||| | | | | ||||
Sbjct 57062867 AGGACCAGATGCAGGGTCTACTCTTTCTGGATGTTGTAGTCAGAAAGACTGCGGCCATCT 57062926
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCA-CGCCTTCCTTATC 18232
||| || ||||| ||| |||| || || || || | |||||| | |||||| |||||
Sbjct 57062927 TCCCGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGT-CACGGGGATTGCCTTCTTTATC 57062985
Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
|||| |||||| | | | | |||| ||| |||||| ||||| ||||||| |
Sbjct 57062986 TTGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCCACTTCAAGGGTGATGAT 57063045
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
||||| || | ||||| || || || ||||||||
Sbjct 57063046 CTTGCCAGTAAGGGTTTTCACGAAGATCTGCATTTT 57063081
>seq646
Length=133456746
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || ||||| || |||||||| || | || || | ||||
Sbjct 124982953 AGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGCCCATCT 124983012
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| ||||| || ||| |||| || || || || || || | ||||||||||||
Sbjct 124983013 TCCAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCT 124983072
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | | |||||| | | | ||||||| ||||||| || | ||||||| |
Sbjct 124983073 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 124983132
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| || |||| || || || || || ||||||
Sbjct 124983133 TTACCAGTCAGAGTCTTCACGAAGATCTGCATT 124983165
>seq1
Length=228908639
Score = 86.0 bits (94), Expect = 5e-12
Identities = 167/246 (68%), Gaps = 2/246 (1%)
Strand=Plus/Minus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| | || | ||||| || || || ||||||
Sbjct 172116192 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA 172116133
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
|| |||||||| | || || | |||||||| || ||||| ||| |||| |||||
Sbjct 172116132 ATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTC 172116073
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263
|| ||||| || | ||||||||||| || | ||| || | | | | ||
Sbjct 172116072 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA 172116013
Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323
|| ||| || | || | ||||||| | || || || | ||||| || ||||| |||
Sbjct 172116012 TCCGAGGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 172115953
Query 18324 ATTTTT 18329
||||||
Sbjct 172115952 ATTTTT 172115947
>seq168
Length=201391403
Score = 82.4 bits (90), Expect = 6e-11
Identities = 168/247 (68%), Gaps = 6/247 (2%)
Strand=Plus/Minus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| | || | ||||| || || || ||||||
Sbjct 5653915 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA 5653856
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
|| |||||||| | || || | |||||||| || ||||| ||| |||| |||||
Sbjct 5653855 ATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTC 5653796
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTG--CTTGACCTGTGCAACAG 18261
|| ||||| || | ||||||||||| | | | ||| ||| || | | | | |
Sbjct 5653795 TGCTGATCAGGAGGAATTCCTTCCTTATC--CTGTATCTTGGCCTTTACATTTTCTATCG 5653738
Query 18262 TGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTT 18321
| || ||| || || | ||||||| | || || || | ||||| || ||||| |
Sbjct 5653737 TATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTTCCCGTAAGGGTTTTCACGAAAATCT 5653678
Query 18322 GCATTTT 18328
|||||||
Sbjct 5653677 GCATTTT 5653671
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379155782665695
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |